LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
sea_urchin/__init__.py
sea_urchin/sea_urchin.py
sea_urchin.egg-info/PKG-INFO
sea_urchin.egg-info/SOURCES.txt
sea_urchin.egg-info/dependency_links.txt
sea_urchin.egg-info/requires.txt
sea_urchin.egg-info/top_level.txt
sea_urchin/alignement/__init__.py
sea_urchin/alignement/align.py
sea_urchin/alignement/alignment_routines.py
sea_urchin/alignement/fastoverlap_routines.py
sea_urchin/alignement/ira_routines.py
sea_urchin/alignement/old_tmp.py
sea_urchin/clustering/__init__.py
sea_urchin/clustering/clusterize.py
sea_urchin/clustering/metrics.py
sea_urchin/colvars/__init__.py
sea_urchin/colvars/auxiliary_functions.py
sea_urchin/colvars/pmf.py
sea_urchin/colvars/min_energy_path/MEPSAnd_ASM.py
sea_urchin/colvars/min_energy_path/__init__.py
sea_urchin/colvars/plotting/__init__.py
sea_urchin/colvars/plotting/plot_functions.py
sea_urchin/colvars/scripts/__init__.py
sea_urchin/colvars/scripts/multiple_replica.py
sea_urchin/colvars/scripts/test_hill2surface.py
sea_urchin/plotting/__init__.py
sea_urchin/plotting/plot.py
sea_urchin/plotting/rendering.py
sea_urchin/plotting/video.py
sea_urchin/read/__init__.py
sea_urchin/read/read.py
sea_urchin/taxionomy/__init__.py
sea_urchin/taxionomy/composition.py
sea_urchin/taxionomy/coordination.py
sea_urchin/taxionomy/isomer.py
sea_urchin/utilities/__init__.py
sea_urchin/utilities/auxiliary_functions.py
sea_urchin/utilities/permutations.py
sea_urchin/utilities/su_cluster.py