# MultiQC modules (generated by `catalog refresh-index`).
# Advisory index: a tool listed here is already parsed by MultiQC.
adapterremoval
afterqc
anglerfish
ataqv
bakta
bamdst
bamtools
bases2fastq
bbduk
bbmap
bcftools
bcl2fastq
bclconvert
biobambam2
biobloomtools
biscuit
bismark
bowtie1
bowtie2
busco
bustools
ccs
cellranger
cellranger_arc
cells2stats
checkatlas
checkm
checkm2
checkqc
clipandmerge
clusterflow
conpair
cutadapt
damageprofiler
deacon
dedup
deeptools
diamond
disambiguate
dragen
dragen_fastqc
eigenstratdatabasetools
fastp
fastq_screen
fastqc
fastqe
featurecounts
fgbio
filtlong
flash
flexbar
freyja
ganon
gatk
gffcompare
glimpse
goleft_indexcov
gopeaks
gtdbtk
haplocheck
happy
hicexplorer
hicpro
hicstuff
hicup
hifi_trimmer
hifiasm
hisat2
homer
hops
hostile
htseq
humid
interop
isoseq
ivar
jcvi
jellyfish
kaiju
kallisto
kat
kraken
leehom
librarian
lima
longranger
macs2
malt
mapdamage
megahit
metaphlan
methurator
methylqa
mgikit
minionqc
mirtop
mirtrace
mosaicatcher
mosdepth
motus
mtnucratio
multivcfanalyzer
nanoq
nanostat
nextclade
ngsbits
ngsderive
nonpareil
odgi
optitype
pairtools
pangolin
pbmarkdup
peddy
percolator
phantompeakqualtools
picard
porechop
preseq
prinseqplusplus
prokka
purple
pychopper
pycoqc
qc3C
qorts
qualimap
quast
ribodetector
ribotish
ribowaltz
riker
rna_seqc
rockhopper
rsem
rseqc
salmon
sambamba
samblaster
samtools
sargasso
seqera_cli
seqfu
seqkit
sequali
seqwho
seqyclean
sexdeterrmine
sickle
sincei
skewer
slamdunk
snippy
snpeff
snpsplit
somalier
sompy
sortmerna
sourmash
spaceranger
stacks
star
supernova
sylphtax
telseq
theta2
tophat
trim_galore
trimmomatic
truvari
umicollapse
umitools
varscan2
vcftools
vep
verifybamid
vg
whatshap
xengsort
xenium
xenome
