LICENSE
README.md
setup.cfg
setup.py
mgexpose/__init__.py
mgexpose/__main__.py
mgexpose/handle_args.py
mgexpose.egg-info/PKG-INFO
mgexpose.egg-info/SOURCES.txt
mgexpose.egg-info/dependency_links.txt
mgexpose.egg-info/entry_points.txt
mgexpose.egg-info/not-zip-safe
mgexpose.egg-info/requires.txt
mgexpose.egg-info/top_level.txt
mgexpose/genes/__init__.py
mgexpose/genes/gene.py
mgexpose/genes/geneset.py
mgexpose/genes/annotation/__init__.py
mgexpose/genes/annotation/annotate.py
mgexpose/genes/annotation/cluster.py
mgexpose/genes/annotation/clustering_parser.py
mgexpose/genes/annotation/eggnog.py
mgexpose/genes/annotation/phage.py
mgexpose/genes/annotation/recombinases.py
mgexpose/genes/annotation/secretion.py
mgexpose/islands/__init__.py
mgexpose/islands/annotated_genomic_island.py
mgexpose/islands/genomic_island.py
mgexpose/islands/island_processing.py
mgexpose/islands/mge_genomic_island.py
mgexpose/recombinases/__init__.py
mgexpose/recombinases/recombinases.py
mgexpose/utils/__init__.py
mgexpose/utils/chunk_reader.py
mgexpose/utils/gffio.py
mgexpose/utils/gffutils.py
mgexpose/utils/readers/__init__.py
mgexpose/utils/readers/readers.py
mgexpose/utils/upstream/__init__.py
mgexpose/utils/upstream/gene_calling.py
mgexpose/utils/upstream/recombinase_scan.py
mgexpose/utils/writers/__init__.py
test/test_mge_annotation.py