__pycache__/
*.pyc
.mypy_cache/
.pytest_cache/
.DS_Store
.idea
*.egg-info/
dist/
build/
.env
*.log
bot/logs/
output/
profiles/
analysis_log.md
result.json
skills/pharmgx-reporter/report/
skills/genome-compare/data/manuel_corpas_23andme.txt
skills/pr-audit/
data/
!skills/ancestry-risk-profiler/data/
!skills/ancestry-risk-profiler/data/aisnp_panel.csv
!skills/ancestry-risk-profiler/data/ancestry_risk_associations.json
!skills/ancestry-risk-profiler/data/demo_patient_south_asian.txt
!skills/ancestry-risk-profiler/data/PROVENANCE.md
!skills/methylation-clock/data/
!skills/methylation-clock/data/GSE139307_small.csv.gz
!skills/rare-disease-rnaseq/data/
!skills/rare-disease-rnaseq/data/disease_panel.csv
!skills/cnv-acmg-classifier/data/
!skills/cnv-acmg-classifier/data/curated_dosage_map.csv
!skills/cnv-acmg-classifier/data/curated_gene_model.csv
skills/proteomics-de/output_diann_test/
skills/proteomics-de/output_maxquant_test/
.venv/
.cursor/
.claude/
.claire/
brief.md

# Superpowers framework artifacts (brainstorming/plans/specs) — never committed
docs/superpowers/
**/superpowers/plans/
**/superpowers/specs/
PR-AUDITS/

# Local Corpas-Core session logs, never publish
*-session.md
