config/day_profiles/local/templates/config.yaml
config/day_profiles/local/templates/rule_config.yaml
config/day_profiles/slurm/templates/config.yaml
config/day_profiles/slurm/templates/rule_config.yaml
config/day_profiles/slurm_rhel/templates/config.yaml
config/day_profiles/slurm_rhel/templates/rule_config.yaml
daylily_omics_analysis/slurm/slurm_submit.py
daylily_omics_analysis/slurm/submit_partition_order.py
workflow/envs/bclconvert_metrics_v0.1.yaml
workflow/envs/gba_v0.1.yaml
workflow/envs/hapsma_v0.1.yaml
workflow/envs/peddy.yaml
workflow/envs/peddy_v0.1.yaml
workflow/envs/report.yaml
workflow/envs/run_qc_reports_v0.1.yaml
workflow/envs/site_mix_contam_v0.1.yaml
workflow/envs/sma_finder_v0.1.yaml
workflow/envs/smaca_v0.1.yaml
workflow/envs/somalier.yaml
workflow/envs/unmapped_metagenomics_ganon2_v0.1.yaml
workflow/envs/unmapped_metagenomics_v0.1.yaml
workflow/rules/gatk_contam.smk
workflow/rules/multiqc_final_wgs.smk
workflow/rules/relatedness_batch.smk
workflow/rules/sent_hybrid_ilmn_ont_modular.refactored.smk
workflow/rules/site_mix_contam.smk
workflow/rules/tiddit.smk
workflow/rules/unmapped_metagenomics.smk
workflow/scripts/dayoa_spool_publish.bash
workflow/scripts/fastq_path_lists.py
workflow/scripts/stage_multiqc_inputs.py
workflow/scripts/normalize_ganon2_multiqc_log.py
