Index

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

abort_session() (gc3utils.commands.cmd_gsession method)
add() (gc3libs.core.Core method)
(gc3libs.core.Engine method)
add_params() (gc3libs.authentication.Auth method)
adjoin() (gc3libs.url.Url method)
after_main_loop() (gc3libs.cmdline.SessionBasedScript method)
API
append() (gc3libs.utils.History method)
Application (class in gc3libs)
ApplicationDescriptionError
AppPotApplication (class in gc3libs.application.apppot)
Arc1Lrms (class in gc3libs.backends.arc1)
ARC_CACHE_TIME (gc3libs.Default attribute)
ARC_LOST_JOB_TIMEOUT (gc3libs.Default attribute)
ArcLrms (class in gc3libs.backends.arc0)
attach() (gc3libs.Task method)
Auth (class in gc3libs.authentication)
authenticated() (gc3libs.backends.LRMS static method)
AuthError

B

backup() (in module gc3libs.utils)
basename_sans() (in module gc3libs.utils)
BatchSystem (class in gc3libs.backends.batch)
before_main_loop() (gc3libs.cmdline.SessionBasedScript method)
bsub() (gc3libs.Application method)
(gc3libs.application.gamess.GamessAppPotApplication method)
(gc3libs.application.gamess.GamessApplication method)

C

cache_for() (in module gc3libs.utils)
cancel_job() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
cat() (in module gc3libs.utils)
close() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
(gc3libs.core.Core method)
(gc3libs.core.Engine method)
cmd_gclean (class in gc3utils.commands)
cmd_gget (class in gc3utils.commands)
cmd_ginfo (class in gc3utils.commands)
cmd_gkill (class in gc3utils.commands)
cmd_gresub (class in gc3utils.commands)
cmd_gselect (class in gc3utils.commands)
cmd_gservers (class in gc3utils.commands)
cmd_gsession (class in gc3utils.commands)
cmd_gstat (class in gc3utils.commands)
cmd_gtail (class in gc3utils.commands)
cmdline() (gc3libs.Application method)
(gc3libs.application.gamess.GamessAppPotApplication method)
Command-line
Command-line option
compatible_resources() (gc3libs.Application method)
compute_nr_of_slots() (in module gc3libs.backends.sge)
ConfigurationError
configure_logger() (in module gc3libs)
copy() (gc3libs.utils.Struct method)
copy_recursively() (in module gc3libs.utils)
copyfile() (in module gc3libs.utils)
copytree() (in module gc3libs.utils)
Core
(class in gc3libs.core)
count() (in module gc3libs.utils)
count_jobs() (in module gc3libs.backends.pbs)
(in module gc3libs.backends.sge)

D

DataStagingError
Default (class in gc3libs)
defproperty() (in module gc3libs.utils)
delete_session() (gc3utils.commands.cmd_gsession method)
deploy_configuration_file() (in module gc3libs.utils)
detach() (gc3libs.Task method)
DetachedFromGridError
dirname() (in module gc3libs.utils)
DuplicateEntryError
Duration (class in gc3libs.quantity)

E

Engine (class in gc3libs.core)
Enum (class in gc3libs.utils)
Error
every_main_loop() (gc3libs.cmdline.SessionBasedScript method)
exitcode (gc3libs.Run attribute)
expansions() (gc3libs.template.Template method)
(in module gc3libs.template)

F

FatalError
fetch_output() (gc3libs.core.Core method)
(gc3libs.Task method)
(gc3libs.core.Engine method)
fetch_output_error() (gc3libs.Application method)
filter_by_iofile() (gc3utils.commands.cmd_gselect method)
filter_by_regexp() (gc3utils.commands.cmd_gselect method)
filter_by_state() (gc3utils.commands.cmd_gselect method)
filter_by_submission_date() (gc3utils.commands.cmd_gselect method)
first() (in module gc3libs.utils)
format_message() (gc3libs.utils.History method)
free() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.Task method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
(gc3libs.core.Core method)
(gc3libs.core.Engine method)
from_template() (in module gc3libs.utils)

G

GamessApplication (class in gc3libs.application.gamess)
GamessAppPotApplication (class in gc3libs.application.gamess)
gc3libs (module)
gc3libs.application (module)
gc3libs.application.apppot (module)
gc3libs.application.gamess (module)
gc3libs.application.rosetta (module)
gc3libs.authentication (module)
gc3libs.authentication.grid (module)
gc3libs.authentication.ssh (module)
gc3libs.backends (module)
gc3libs.backends.arc0 (module)
gc3libs.backends.arc1 (module)
gc3libs.backends.batch (module)
gc3libs.backends.lsf (module)
gc3libs.backends.pbs (module)
gc3libs.backends.sge (module)
gc3libs.backends.shellcmd (module)
gc3libs.backends.transport (module)
gc3libs.cmdline (module)
gc3libs.core (module)
gc3libs.exceptions (module)
gc3libs.persistence (module)
gc3libs.quantity (module)
gc3libs.template (module)
gc3libs.url (module)
gc3libs.utils (module)
gc3utils (module)
gc3utils.commands (module)
gc3utils.frontend (module)
GC3UtilsScript (class in gc3libs.cmdline)
generic_filename_mapping() (in module gc3libs.backends.batch)
get() (gc3libs.authentication.Auth method)
get_jobid_from_submit_output() (gc3libs.backends.batch.BatchSystem method)
get_resource_status() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.lsf.LsfLrms method)
(gc3libs.backends.pbs.PbsLrms method)
(gc3libs.backends.sge.SgeLrms method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
get_resources() (gc3libs.core.Core method)
get_results() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
getattr_nested() (in module gc3libs.utils)

H

History (class in gc3libs.utils)

I

ifelse() (in module gc3libs.utils)
in_state() (gc3libs.Run method)
info (gc3libs.Run attribute)
InputFileError
InternalError
InvalidArgument
InvalidOperation
InvalidResourceName
InvalidType
InvalidUsage
InvalidValue
irange() (in module gc3libs.utils)

J

Job

K

kill() (gc3libs.core.Core method)
(gc3libs.Task method)
(gc3libs.core.Engine method)

L

last() (gc3libs.utils.History method)
list_jobs() (gc3utils.commands.cmd_gsession method)
LoadError
lock() (in module gc3libs.utils)
Log (in module gc3libs.utils)
LRMS (class in gc3libs.backends)
LsfLrms (class in gc3libs.backends.lsf)

M

main() (in module gc3utils.frontend)
make_directory_path() (gc3libs.cmdline.SessionBasedScript method)
make_remote_and_local_path_pair() (in module gc3libs.backends.batch)
make_task_controller() (gc3libs.cmdline.SessionBasedScript method)
Memory (class in gc3libs.quantity)
mkdir() (in module gc3libs.utils)
mkdir_with_backup() (in module gc3libs.utils)

N

new() (gc3libs.Task method)
new_tasks() (gc3libs.cmdline.SessionBasedScript method)
NoConfigurationFile
NoneAuth (class in gc3libs.authentication)
nonnegative_int() (in module gc3libs.cmdline)
NoResources

O

OutputNotAvailableError

P

parse_qhost_f() (in module gc3libs.backends.sge)
parse_qstat_f() (in module gc3libs.backends.sge)
PbsLrms (class in gc3libs.backends.pbs)
peek() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.Task method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
(gc3libs.core.Core method)
(gc3libs.core.Engine method)
Persistent
PlusInfinity (class in gc3libs.utils)
positive_int() (in module gc3libs.cmdline)
pre_run() (gc3libs.cmdline.GC3UtilsScript method)
(gc3libs.cmdline.SessionBasedScript method)
prettyprint() (in module gc3libs.utils)
print_summary_table() (gc3libs.cmdline.SessionBasedScript method)
print_tasks_table() (gc3libs.cmdline.SessionBasedScript method)
process_args() (gc3libs.cmdline.SessionBasedScript method)
progress() (gc3libs.core.Engine method)
(gc3libs.Task method)
progressive_number() (in module gc3libs.utils)
PROXY_VALIDITY_THRESHOLD (gc3libs.Default attribute)
Python Enhancement Proposals
PEP 8

Q

qgms() (gc3libs.application.gamess.GamessApplication method)
qsub_pbs() (gc3libs.Application method)
(gc3libs.application.gamess.GamessAppPotApplication method)
(gc3libs.application.gamess.GamessApplication method)
qsub_sge() (gc3libs.Application method)
(gc3libs.application.gamess.GamessAppPotApplication method)
(gc3libs.application.gamess.GamessApplication method)
Quantity (class in gc3libs.quantity)

R

rank_resources() (gc3libs.Application method)
read_contents() (in module gc3libs.utils)
RecoverableDataStagingError
RecoverableError
remove() (gc3libs.core.Core method)
(gc3libs.core.Engine method)
Resource
returncode (gc3libs.Run attribute)
RosettaApplication (class in gc3libs.application.rosetta)
RosettaDockingApplication (class in gc3libs.application.rosetta)
Run (class in gc3libs)
Run.Arch (class in gc3libs)
running() (gc3libs.Task method)

S

safe_repr() (in module gc3libs.utils)
same_docstring_as() (in module gc3libs.utils)
samefile() (in module gc3libs.utils)
select_resource() (gc3libs.core.Core method)
Session
SessionBasedScript (class in gc3libs.cmdline)
setup() (gc3libs.cmdline.GC3UtilsScript method)
(gc3libs.cmdline.SessionBasedScript method)
(gc3utils.commands.cmd_gservers method)
setup_args() (gc3libs.cmdline.GC3UtilsScript method)
(gc3libs.cmdline.SessionBasedScript method)
(gc3utils.commands.cmd_gservers method)
(gc3utils.commands.cmd_gtail method)
SgeLrms (class in gc3libs.backends.sge)
ShellcmdLrms (class in gc3libs.backends.shellcmd)
shellexit_to_returncode() (gc3libs.Run static method)
show_log() (gc3utils.commands.cmd_gsession method)
signal (gc3libs.Run attribute)
Singleton (class in gc3libs.utils)
State
state (gc3libs.Run attribute)
stats() (gc3libs.core.Engine method)
stopped() (gc3libs.Task method)
string_to_boolean() (in module gc3libs.utils)
stripped() (in module gc3libs.utils)
Struct (class in gc3libs.utils)
submit() (gc3libs.core.Core method)
(gc3libs.Task method)
(gc3libs.core.Engine method)
submit_error() (gc3libs.Application method)
submit_job() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
submitted() (gc3libs.Task method)
substitute() (gc3libs.template.Template method)

T

Task (class in gc3libs)
TaskError
Template (class in gc3libs.template)
terminated() (gc3libs.application.gamess.GamessApplication method)
(gc3libs.Task method)
(gc3libs.application.rosetta.RosettaApplication method)
terminating() (gc3libs.Task method)
test_file() (in module gc3libs.utils)
to_bytes() (in module gc3libs.utils)
to_timedelta() (gc3libs.quantity.Duration method)

U

UnexpectedStateError
uniq() (in module gc3libs.utils)
unknown() (gc3libs.Task method)
UnknownJob
UnknownJobState
unlock() (in module gc3libs.utils)
UnrecoverableDataStagingError
UnrecoverableError
update_job_state() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
(gc3libs.core.Core method)
(gc3libs.core.Engine method)
update_job_state_error() (gc3libs.Application method)
update_resources() (gc3libs.core.Core method)
update_state() (gc3libs.Task method)
Url (class in gc3libs.url)
UrlKeyDict (class in gc3libs.url)
UrlValueDict (class in gc3libs.url)

V

validate_data() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)

W

wait() (gc3libs.Task method)
Walltime
write_contents() (in module gc3libs.utils)

X

xrsl() (gc3libs.Application method)