Index

A

abort_session() (gc3utils.commands.cmd_gsession method) add() (gc3libs.core.Core method) (gc3libs.core.Engine method) add_params() (gc3libs.authentication.Auth method) adjoin() (gc3libs.url.Url method) after_main_loop() (gc3libs.cmdline.SessionBasedScript method) API append() (gc3libs.utils.History method) Application (class in gc3libs) ApplicationDescriptionError

AppPotApplication (class in gc3libs.application.apppot) Arc1Lrms (class in gc3libs.backends.arc1) ARC_CACHE_TIME (gc3libs.Default attribute) ARC_LOST_JOB_TIMEOUT (gc3libs.Default attribute) ArcLrms (class in gc3libs.backends.arc0) attach() (gc3libs.Task method) Auth (class in gc3libs.authentication) authenticated() (gc3libs.backends.LRMS static method) AuthError

B

backup() (in module gc3libs.utils) basename_sans() (in module gc3libs.utils) BatchSystem (class in gc3libs.backends.batch)

before_main_loop() (gc3libs.cmdline.SessionBasedScript method) bsub() (gc3libs.Application method) (gc3libs.application.gamess.GamessAppPotApplication method) (gc3libs.application.gamess.GamessApplication method)

C

cache_for() (in module gc3libs.utils) cancel_job() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) cat() (in module gc3libs.utils) close() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) (gc3libs.core.Core method) (gc3libs.core.Engine method) cmd_gclean (class in gc3utils.commands) cmd_gget (class in gc3utils.commands) cmd_ginfo (class in gc3utils.commands) cmd_gkill (class in gc3utils.commands) cmd_gresub (class in gc3utils.commands) cmd_gselect (class in gc3utils.commands) cmd_gservers (class in gc3utils.commands) cmd_gsession (class in gc3utils.commands) cmd_gstat (class in gc3utils.commands) cmd_gtail (class in gc3utils.commands)

cmdline() (gc3libs.Application method) (gc3libs.application.gamess.GamessAppPotApplication method) Command-line Command-line option compatible_resources() (gc3libs.Application method) compute_nr_of_slots() (in module gc3libs.backends.sge) ConfigurationError configure_logger() (in module gc3libs) copy() (gc3libs.utils.Struct method) copy_recursively() (in module gc3libs.utils) copyfile() (in module gc3libs.utils) copytree() (in module gc3libs.utils) Core (class in gc3libs.core) count() (in module gc3libs.utils) count_jobs() (in module gc3libs.backends.pbs) (in module gc3libs.backends.sge)

D

DataStagingError Default (class in gc3libs) defproperty() (in module gc3libs.utils) delete_session() (gc3utils.commands.cmd_gsession method) deploy_configuration_file() (in module gc3libs.utils)

detach() (gc3libs.Task method) DetachedFromGridError dirname() (in module gc3libs.utils) DuplicateEntryError Duration (class in gc3libs.quantity)

E

Engine (class in gc3libs.core) Enum (class in gc3libs.utils) Error

every_main_loop() (gc3libs.cmdline.SessionBasedScript method) exitcode (gc3libs.Run attribute) expansions() (gc3libs.template.Template method) (in module gc3libs.template)

F

FatalError fetch_output() (gc3libs.core.Core method) (gc3libs.Task method) (gc3libs.core.Engine method) fetch_output_error() (gc3libs.Application method) filter_by_iofile() (gc3utils.commands.cmd_gselect method) filter_by_regexp() (gc3utils.commands.cmd_gselect method) filter_by_state() (gc3utils.commands.cmd_gselect method)

filter_by_submission_date() (gc3utils.commands.cmd_gselect method) first() (in module gc3libs.utils) format_message() (gc3libs.utils.History method) free() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.Task method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) (gc3libs.core.Core method) (gc3libs.core.Engine method) from_template() (in module gc3libs.utils)

G

GamessApplication (class in gc3libs.application.gamess) GamessAppPotApplication (class in gc3libs.application.gamess) gc3libs (module) gc3libs.application (module) gc3libs.application.apppot (module) gc3libs.application.gamess (module) gc3libs.application.rosetta (module) gc3libs.authentication (module) gc3libs.authentication.grid (module) gc3libs.authentication.ssh (module) gc3libs.backends (module) gc3libs.backends.arc0 (module) gc3libs.backends.arc1 (module) gc3libs.backends.batch (module) gc3libs.backends.lsf (module) gc3libs.backends.pbs (module) gc3libs.backends.sge (module) gc3libs.backends.shellcmd (module) gc3libs.backends.transport (module)

gc3libs.cmdline (module) gc3libs.core (module) gc3libs.exceptions (module) gc3libs.persistence (module) gc3libs.quantity (module) gc3libs.template (module) gc3libs.url (module) gc3libs.utils (module) gc3utils (module) gc3utils.commands (module) gc3utils.frontend (module) GC3UtilsScript (class in gc3libs.cmdline) generic_filename_mapping() (in module gc3libs.backends.batch) get() (gc3libs.authentication.Auth method) get_jobid_from_submit_output() (gc3libs.backends.batch.BatchSystem method) get_resource_status() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.lsf.LsfLrms method) (gc3libs.backends.pbs.PbsLrms method) (gc3libs.backends.sge.SgeLrms method) (gc3libs.backends.shellcmd.ShellcmdLrms method) get_resources() (gc3libs.core.Core method) get_results() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) getattr_nested() (in module gc3libs.utils)

H

History (class in gc3libs.utils)

I

ifelse() (in module gc3libs.utils) in_state() (gc3libs.Run method) info (gc3libs.Run attribute) InputFileError InternalError InvalidArgument

InvalidOperation InvalidResourceName InvalidType InvalidUsage InvalidValue irange() (in module gc3libs.utils)

J

Job

K

kill() (gc3libs.core.Core method) (gc3libs.Task method) (gc3libs.core.Engine method)

L

last() (gc3libs.utils.History method) list_jobs() (gc3utils.commands.cmd_gsession method) LoadError lock() (in module gc3libs.utils)

Log (in module gc3libs.utils) LRMS (class in gc3libs.backends) LsfLrms (class in gc3libs.backends.lsf)

M

main() (in module gc3utils.frontend) make_directory_path() (gc3libs.cmdline.SessionBasedScript method) make_remote_and_local_path_pair() (in module gc3libs.backends.batch) make_task_controller() (gc3libs.cmdline.SessionBasedScript method)

Memory (class in gc3libs.quantity) mkdir() (in module gc3libs.utils) mkdir_with_backup() (in module gc3libs.utils)

N

new() (gc3libs.Task method) new_tasks() (gc3libs.cmdline.SessionBasedScript method) NoConfigurationFile

NoneAuth (class in gc3libs.authentication) nonnegative_int() (in module gc3libs.cmdline) NoResources

O

OutputNotAvailableError

P

parse_qhost_f() (in module gc3libs.backends.sge) parse_qstat_f() (in module gc3libs.backends.sge) PbsLrms (class in gc3libs.backends.pbs) peek() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.Task method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) (gc3libs.core.Core method) (gc3libs.core.Engine method) Persistent PlusInfinity (class in gc3libs.utils) positive_int() (in module gc3libs.cmdline) pre_run() (gc3libs.cmdline.GC3UtilsScript method) (gc3libs.cmdline.SessionBasedScript method)

prettyprint() (in module gc3libs.utils) print_summary_table() (gc3libs.cmdline.SessionBasedScript method) print_tasks_table() (gc3libs.cmdline.SessionBasedScript method) process_args() (gc3libs.cmdline.SessionBasedScript method) progress() (gc3libs.core.Engine method) (gc3libs.Task method) progressive_number() (in module gc3libs.utils) PROXY_VALIDITY_THRESHOLD (gc3libs.Default attribute) Python Enhancement Proposals PEP 8

Q

qgms() (gc3libs.application.gamess.GamessApplication method) qsub_pbs() (gc3libs.Application method) (gc3libs.application.gamess.GamessAppPotApplication method) (gc3libs.application.gamess.GamessApplication method)

qsub_sge() (gc3libs.Application method) (gc3libs.application.gamess.GamessAppPotApplication method) (gc3libs.application.gamess.GamessApplication method) Quantity (class in gc3libs.quantity)

R

rank_resources() (gc3libs.Application method) read_contents() (in module gc3libs.utils) RecoverableDataStagingError RecoverableError remove() (gc3libs.core.Core method) (gc3libs.core.Engine method) Resource

returncode (gc3libs.Run attribute) RosettaApplication (class in gc3libs.application.rosetta) RosettaDockingApplication (class in gc3libs.application.rosetta) Run (class in gc3libs) Run.Arch (class in gc3libs) running() (gc3libs.Task method)

S

safe_repr() (in module gc3libs.utils) same_docstring_as() (in module gc3libs.utils) samefile() (in module gc3libs.utils) select_resource() (gc3libs.core.Core method) Session SessionBasedScript (class in gc3libs.cmdline) setup() (gc3libs.cmdline.GC3UtilsScript method) (gc3libs.cmdline.SessionBasedScript method) (gc3utils.commands.cmd_gservers method) setup_args() (gc3libs.cmdline.GC3UtilsScript method) (gc3libs.cmdline.SessionBasedScript method) (gc3utils.commands.cmd_gservers method) (gc3utils.commands.cmd_gtail method) SgeLrms (class in gc3libs.backends.sge) ShellcmdLrms (class in gc3libs.backends.shellcmd) shellexit_to_returncode() (gc3libs.Run static method) show_log() (gc3utils.commands.cmd_gsession method) signal (gc3libs.Run attribute)

Singleton (class in gc3libs.utils) State state (gc3libs.Run attribute) stats() (gc3libs.core.Engine method) stopped() (gc3libs.Task method) string_to_boolean() (in module gc3libs.utils) stripped() (in module gc3libs.utils) Struct (class in gc3libs.utils) submit() (gc3libs.core.Core method) (gc3libs.Task method) (gc3libs.core.Engine method) submit_error() (gc3libs.Application method) submit_job() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) submitted() (gc3libs.Task method) substitute() (gc3libs.template.Template method)

T

Task (class in gc3libs) TaskError Template (class in gc3libs.template) terminated() (gc3libs.application.gamess.GamessApplication method) (gc3libs.Task method) (gc3libs.application.rosetta.RosettaApplication method)

terminating() (gc3libs.Task method) test_file() (in module gc3libs.utils) to_bytes() (in module gc3libs.utils) to_timedelta() (gc3libs.quantity.Duration method)

U

UnexpectedStateError uniq() (in module gc3libs.utils) unknown() (gc3libs.Task method) UnknownJob UnknownJobState unlock() (in module gc3libs.utils) UnrecoverableDataStagingError UnrecoverableError

update_job_state() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) (gc3libs.core.Core method) (gc3libs.core.Engine method) update_job_state_error() (gc3libs.Application method) update_resources() (gc3libs.core.Core method) update_state() (gc3libs.Task method) Url (class in gc3libs.url) UrlKeyDict (class in gc3libs.url) UrlValueDict (class in gc3libs.url)

V

validate_data() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method)

W

wait() (gc3libs.Task method) Walltime

write_contents() (in module gc3libs.utils)

X

xrsl() (gc3libs.Application method)