LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
holowizard/__init__.py
holowizard/logo.png
holowizard.egg-info/PKG-INFO
holowizard.egg-info/SOURCES.txt
holowizard.egg-info/dependency_links.txt
holowizard.egg-info/entry_points.txt
holowizard.egg-info/requires.txt
holowizard.egg-info/top_level.txt
holowizard/core/LICENSE
holowizard/core/__init__.py
holowizard/core/api/__init__.py
holowizard/core/api/functions/__init__.py
holowizard/core/api/functions/default_load_data_callback.py
holowizard/core/api/functions/find_focus/__init__.py
holowizard/core/api/functions/find_focus/find_focus.py
holowizard/core/api/functions/find_focus/find_focus_flatfieldcorrection.py
holowizard/core/api/functions/find_focus/find_focus_flatfieldcorrection_io.py
holowizard/core/api/functions/find_focus/find_focus_z01_a0.py
holowizard/core/api/functions/find_focus/find_focus_z01_a0_flatfieldcorrection.py
holowizard/core/api/functions/flatfield_correction/__init__.py
holowizard/core/api/functions/flatfield_correction/calc_flatfield_components_io.py
holowizard/core/api/functions/flatfield_correction/calc_flatfield_components_o.py
holowizard/core/api/functions/flatfield_correction/flatfield_correction_i.py
holowizard/core/api/functions/flatfield_correction/get_synthetic_flatfield.py
holowizard/core/api/functions/probe_retrieval/__init__.py
holowizard/core/api/functions/probe_retrieval/reconstruction.py
holowizard/core/api/functions/single_projection/__init__.py
holowizard/core/api/functions/single_projection/reconstruction.py
holowizard/core/api/functions/single_projection/reconstruction_flatfieldcorrection.py
holowizard/core/api/functions/single_projection/reconstruction_flatfieldcorrection_i.py
holowizard/core/api/functions/single_projection/reconstruction_flatfieldcorrection_io.py
holowizard/core/api/functions/single_projection/reconstruction_io.py
holowizard/core/api/parameters/__init__.py
holowizard/core/api/parameters/beam_setup.py
holowizard/core/api/parameters/dask_options.py
holowizard/core/api/parameters/data_dimensions.py
holowizard/core/api/parameters/flatfield_components_params.py
holowizard/core/api/parameters/flatfield_correction_params.py
holowizard/core/api/parameters/measurement.py
holowizard/core/api/parameters/options.py
holowizard/core/api/parameters/padding.py
holowizard/core/api/parameters/reco_params.py
holowizard/core/api/parameters/regularization.py
holowizard/core/api/parameters/default_parameters/__init__.py
holowizard/core/api/parameters/default_parameters/example_magnesium_wire.py
holowizard/core/api/parameters/default_parameters/example_spider_hair.py
holowizard/core/api/parameters/default_parameters/find_focus.py
holowizard/core/api/parameters/paths/__init__.py
holowizard/core/api/parameters/paths/focus_series_paths.py
holowizard/core/api/parameters/paths/paths.py
holowizard/core/api/parameters/paths/project_paths.py
holowizard/core/api/viewer/__init__.py
holowizard/core/api/viewer/hdf5_viewer.py
holowizard/core/api/viewer/loss_viewer.py
holowizard/core/api/viewer/pyplot_viewer.py
holowizard/core/api/viewer/pyplot_viewer_holodemo.py
holowizard/core/api/viewer/pyplot_viewer_probe_retrieval.py
holowizard/core/api/viewer/zeromq_viewer.py
holowizard/core/dask_utils/__init__.py
holowizard/core/dask_utils/dask_controller.py
holowizard/core/find_focus/__init__.py
holowizard/core/find_focus/find_focus_z01.py
holowizard/core/find_focus/find_focus_z01_a0.py
holowizard/core/find_focus/find_focus_z01_a0_orthogonal_search.py
holowizard/core/find_focus/focus_loss_metrics.py
holowizard/core/logging/__init__.py
holowizard/core/logging/header.py
holowizard/core/logging/logger.py
holowizard/core/models/__init__.py
holowizard/core/models/cone_beam.py
holowizard/core/models/fresnel_propagator.py
holowizard/core/models/fresnel_propagator_torch.py
holowizard/core/parameters/__init__.py
holowizard/core/parameters/beam_setup.py
holowizard/core/parameters/dask_options.py
holowizard/core/parameters/data_dimensions.py
holowizard/core/parameters/flatfield_components_params.py
holowizard/core/parameters/flatfield_correction_params.py
holowizard/core/parameters/measurement.py
holowizard/core/parameters/options.py
holowizard/core/parameters/padding.py
holowizard/core/parameters/paths.py
holowizard/core/parameters/reco_params.py
holowizard/core/parameters/regularization.py
holowizard/core/parameters/type_conversion/__init__.py
holowizard/core/parameters/type_conversion/json_writable.py
holowizard/core/parameters/type_conversion/member_value_adapter_interface.py
holowizard/core/parameters/type_conversion/member_value_adapter_numpy.py
holowizard/core/parameters/type_conversion/member_value_adapter_torch.py
holowizard/core/phantoms/__init__.py
holowizard/core/phantoms/ball.py
holowizard/core/phantoms/circle.py
holowizard/core/phantoms/cylinder_round_tip.py
holowizard/core/phantoms/dicty_sketch.py
holowizard/core/phantoms/edge.py
holowizard/core/phantoms/model_wave_field.py
holowizard/core/phantoms/options.py
holowizard/core/phantoms/shepp_logan.py
holowizard/core/phantoms/triangle.py
holowizard/core/preprocessing/__init__.py
holowizard/core/preprocessing/boundaries.py
holowizard/core/preprocessing/calculate_flatfield_components.py
holowizard/core/preprocessing/correct_flatfield.py
holowizard/core/preprocessing/process_data_dimensions.py
holowizard/core/preprocessing/process_image.py
holowizard/core/preprocessing/process_padding_options.py
holowizard/core/reconstruction/__init__.py
holowizard/core/reconstruction/logging.py
holowizard/core/reconstruction/transformation.py
holowizard/core/reconstruction/utils.py
holowizard/core/reconstruction/constraints/__init__.py
holowizard/core/reconstruction/constraints/regularization.py
holowizard/core/reconstruction/constraints/window_2d.py
holowizard/core/reconstruction/constraints/window_functions.py
holowizard/core/reconstruction/gradients/__init__.py
holowizard/core/reconstruction/gradients/analytical.py
holowizard/core/reconstruction/probe_retrieval/__init__.py
holowizard/core/reconstruction/probe_retrieval/basic_operations.py
holowizard/core/reconstruction/probe_retrieval/host_context.py
holowizard/core/reconstruction/probe_retrieval/host_reconstruction.py
holowizard/core/reconstruction/probe_retrieval/worker/__init__.py
holowizard/core/reconstruction/probe_retrieval/worker/worker_context.py
holowizard/core/reconstruction/probe_retrieval/worker/worker_object.py
holowizard/core/reconstruction/probe_retrieval/worker/worker_probe.py
holowizard/core/reconstruction/single_projection/__init__.py
holowizard/core/reconstruction/single_projection/context.py
holowizard/core/reconstruction/single_projection/reconstruct.py
holowizard/core/reconstruction/single_projection/reconstruct_multistage.py
holowizard/core/reconstruction/viewer/__init__.py
holowizard/core/reconstruction/viewer/viewer.py
holowizard/core/scripts/__init__.py
holowizard/core/scripts/create_examples.py
holowizard/core/scripts/examples/__init__.py
holowizard/core/scripts/examples/asrm/__init__.py
holowizard/core/scripts/examples/asrm/magnesium_wire.py
holowizard/core/scripts/examples/asrm/spider_hair.py
holowizard/core/scripts/examples/find_focus/__init__.py
holowizard/core/scripts/examples/find_focus/magnesium_wire.py
holowizard/core/scripts/examples/find_focus/spider_hair.py
holowizard/core/scripts/examples/focus_series_multidim/__init__.py
holowizard/core/scripts/examples/focus_series_multidim/create_focus_series_multidim.sbatch
holowizard/core/scripts/examples/focus_series_multidim/create_focus_series_multidim.sh
holowizard/core/scripts/examples/focus_series_multidim/magnesium_wire.py
holowizard/core/scripts/examples/focus_series_multidim/plot_loss.py
holowizard/core/scripts/examples/focus_series_multidim/spider_hair.py
holowizard/core/scripts/examples/focus_series_singledim/__init__.py
holowizard/core/scripts/examples/focus_series_singledim/create_focus_series_singledim.sbatch
holowizard/core/scripts/examples/focus_series_singledim/create_focus_series_singledim.sh
holowizard/core/scripts/examples/focus_series_singledim/magnesium_wire.py
holowizard/core/scripts/examples/focus_series_singledim/plot_loss.py
holowizard/core/scripts/examples/focus_series_singledim/spider_hair.py
holowizard/core/scripts/examples/multidist/__init__.py
holowizard/core/scripts/examples/multidist/dicty_sketch.py
holowizard/core/scripts/examples/multidist/dicty_sketch_asrm.py
holowizard/core/serialization/__init__.py
holowizard/core/serialization/params_serializer.py
holowizard/core/serialization/serializable_array.py
holowizard/core/utils/__init__.py
holowizard/core/utils/fileio.py
holowizard/core/utils/median_pool_2d.py
holowizard/core/utils/plot_loss_chart.py
holowizard/core/utils/remove_outliers.py
holowizard/core/utils/transform.py
holowizard/core/utils/utils.py
holowizard/forge/LICENSE
holowizard/forge/__init__.py
holowizard/forge/configs/__init__.py
holowizard/forge/configs/default.json
holowizard/forge/configs/parse_config.py
holowizard/forge/configs/test_config.json
holowizard/forge/custom/__init__.py
holowizard/forge/custom/datasets/__init__.py
holowizard/forge/custom/datasets/tiff_by_pattern.py
holowizard/forge/custom/datasets/tiff_multi_channel.py
holowizard/forge/custom/generators/__init__.py
holowizard/forge/custom/generators/mutli_channel_flatfield_generator.py
holowizard/forge/database/__init__.py
holowizard/forge/database/delta_beta/Ag-10.501.csv
holowizard/forge/database/delta_beta/Au-19.32.csv
holowizard/forge/database/delta_beta/Cu-8.96.csv
holowizard/forge/database/delta_beta/Fe-7.874.csv
holowizard/forge/database/delta_beta/Mg-1.738.csv
holowizard/forge/database/delta_beta/__init__.py
holowizard/forge/database/transmission/Ag-10.501.csv
holowizard/forge/database/transmission/Au-19.32.csv
holowizard/forge/database/transmission/Cu-8.96.csv
holowizard/forge/database/transmission/Fe-7.874.csv
holowizard/forge/database/transmission/Mg-1.738.csv
holowizard/forge/database/transmission/__init__.py
holowizard/forge/datasets/__init__.py
holowizard/forge/datasets/base_dataset.py
holowizard/forge/datasets/hdf5_dataset.py
holowizard/forge/datasets/tiff_dataset.py
holowizard/forge/experiment/__init__.py
holowizard/forge/experiment/flatfield/__init__.py
holowizard/forge/experiment/flatfield/constant_flatfield.py
holowizard/forge/experiment/flatfield/flatfield.py
holowizard/forge/experiment/flatfield/multi_channel_flatfield.py
holowizard/forge/experiment/probe/__init__.py
holowizard/forge/experiment/probe/beam_config.py
holowizard/forge/experiment/probe/constant_probe.py
holowizard/forge/experiment/probe/polynomial_probe.py
holowizard/forge/experiment/probe/probe.py
holowizard/forge/experiment/setup/__init__.py
holowizard/forge/experiment/setup/nfh_constant_setup.py
holowizard/forge/experiment/setup/nfh_setup.py
holowizard/forge/experiment/setup/nfh_setup.py.orig
holowizard/forge/experiment/setup/setup.py
holowizard/forge/experiment/simulation/__init__.py
holowizard/forge/experiment/simulation/nfh_simulation.py
holowizard/forge/experiment/simulation/simulation.py
holowizard/forge/generators/__init__.py
holowizard/forge/generators/data_generator.py
holowizard/forge/generators/flatfield_generator.py
holowizard/forge/generators/hologram_generator.py
holowizard/forge/generators/phantom_generator.py
holowizard/forge/generators/probe_generator.py
holowizard/forge/objects/__init__.py
holowizard/forge/objects/phantom.py
holowizard/forge/objects/physical_properties.py
holowizard/forge/objects/placement.py
holowizard/forge/objects/shape_builder.py
holowizard/forge/objects/shape_sampler.py
holowizard/forge/objects/shapes/__init__.py
holowizard/forge/objects/shapes/ball.py
holowizard/forge/objects/shapes/cylinder.py
holowizard/forge/objects/shapes/cylinder_round_tip.py
holowizard/forge/objects/shapes/ellipse.py
holowizard/forge/objects/shapes/polygon.py
holowizard/forge/objects/shapes/rectangle.py
holowizard/forge/objects/shapes/shape.py
holowizard/forge/scripts/__init__.py
holowizard/forge/scripts/create_testconfig.py
holowizard/forge/scripts/generate_data.py
holowizard/forge/utils/__init__.py
holowizard/forge/utils/data_format_conversion.py
holowizard/forge/utils/datatypes.py
holowizard/forge/utils/fileIO.py
holowizard/forge/utils/noise.py
holowizard/forge/utils/random.py
holowizard/forge/utils/torch_settings.py
holowizard/forge/utils/transforms.py
holowizard/forge/utils/unit_conversions.py
holowizard/forge/utils/utilities.py
holowizard/forge/utils/labeller/__init__.py
holowizard/forge/utils/labeller/hdf5_labeller.py
holowizard/forge/utils/labeller/labeller.py
holowizard/lavue/__init__.py
holowizard/lavue/DESY/LaVue.conf
holowizard/lavue/DESY/__init__.py
holowizard/livereco/LICENSE
holowizard/livereco/__init__.py
holowizard/livereco/client/__init__.py
holowizard/livereco/client/functions.py
holowizard/livereco/client/send.py
holowizard/livereco/client/socket.py
holowizard/livereco/server/__init__.py
holowizard/livereco/server/find_focus.py
holowizard/livereco/server/flatfield_correction.py
holowizard/livereco/server/main.py
holowizard/livereco/server/reconstruction.py
holowizard/pipe/LICENSE
holowizard/pipe/__init__.py
holowizard/pipe/citations.yaml
holowizard/pipe/beamtime/P05.py
holowizard/pipe/beamtime/__init__.py
holowizard/pipe/beamtime/beamtime.py
holowizard/pipe/cluster/__init__.py
holowizard/pipe/cluster/cluster.py
holowizard/pipe/cluster/scheduler.py
holowizard/pipe/cluster/slurm_cluster.py
holowizard/pipe/gui/__init__.py
holowizard/pipe/gui/main_gui.py
holowizard/pipe/gui/gui_utils/__init__.py
holowizard/pipe/gui/gui_utils/find_focus_thread.py
holowizard/pipe/gui/gui_utils/logging_editor.py
holowizard/pipe/gui/gui_utils/phase_retrieval_thread.py
holowizard/pipe/gui/gui_utils/widgets_utils.py
holowizard/pipe/gui/resources/__init__.py
holowizard/pipe/gui/resources/splash.png
holowizard/pipe/gui/windows/__init__.py
holowizard/pipe/gui/windows/main_window.py
holowizard/pipe/gui/windows/splash_screen.py
holowizard/pipe/gui/windows/popup_windows/__init__.py
holowizard/pipe/gui/windows/popup_windows/advanced_json_editor.py
holowizard/pipe/gui/windows/popup_windows/completion_dialog.py
holowizard/pipe/gui/windows/popup_windows/scan_config_dialog.py
holowizard/pipe/scan/__init__.py
holowizard/pipe/scan/p05_scan.py
holowizard/pipe/scan/scan.py
holowizard/pipe/scripts/__init__.py
holowizard/pipe/scripts/holopipe.py
holowizard/pipe/scripts/reco.py
holowizard/pipe/scripts/config/__init__.py
holowizard/pipe/scripts/config/beamtime.yaml
holowizard/pipe/scripts/config/cluster.yaml
holowizard/pipe/scripts/config/defaults.yaml
holowizard/pipe/scripts/config/flatfield.yaml
holowizard/pipe/scripts/config/paths.yaml
holowizard/pipe/scripts/config/scan.yaml
holowizard/pipe/scripts/config/tomography.yaml
holowizard/pipe/scripts/config/find_focus/spider.yaml
holowizard/pipe/scripts/config/find_focus/wire.yaml
holowizard/pipe/scripts/config/reconstruction/spider.yaml
holowizard/pipe/scripts/config/reconstruction/wire.yaml
holowizard/pipe/server/__init__.py
holowizard/pipe/server/app.py
holowizard/pipe/server/websocket_viewer.py
holowizard/pipe/tasks/__init__.py
holowizard/pipe/tasks/find_focus.py
holowizard/pipe/tasks/flat_field_correction.py
holowizard/pipe/tasks/phase_retrieval.py
holowizard/pipe/tasks/tomography.py
holowizard/pipe/templates/__init__.py
holowizard/pipe/templates/dashboard.html
holowizard/pipe/templates/parameter.html
holowizard/pipe/templates/parameter_form.html
holowizard/pipe/templates/scan.html
holowizard/pipe/templates/static/__init__.py
holowizard/pipe/templates/static/loading.css
holowizard/pipe/utils/__init__.py
holowizard/pipe/utils/clean_yaml.py
holowizard/pipe/utils/reco_params.py
holowizard/pipe/utils/submit_and_handle.py