Projects
File
Open File
{% for entry in root_dir.children recursive %} {% if entry.url_path %}
{{ entry.name }}
{% else %} {% endif %} {% if entry.children %}
{{ entry.name }}
{{ loop(entry.children) }}
{% endif %} {% else %} {% endfor %}
{% if jsonProject %}
Project advanced settings
{% endif %}
Save project
Plugins
{% for plugin in plugins %} {% if plugin %}
{{ plugin }}
{% endif %}{% endfor %}
Slide Name
Marker size
100
Gene expression
Cell morphology
Regions
Image layers
Loading markers...
Import gene expression from CSV file:
Barcode column
Name column
X column
Y column
Key
Barcode
Name
[Advanced settings]
Color (only if one color per marker)
Pie-Charts
Load markers
Filter:
Loading markers...
Import cell morphology from CSV file:
Select global ID
Property
X column
Y column
Color scale
Select
Regions
Import
Export
Draw regions
Fill regions
Import
Download regions for later use
Export
Download expression in regions
Export
{% set layerCount = [] %} {% for entry in folder_dir.children recursive %} {% if entry.url_path %} {% if url_for('slide', path=entry.url_path)+".dzi" != slide_url %} {% if layerCount.append(1) %}{% endif %} {% endif %} {% endif %} {% endfor %} {% if layerCount|length > 0 %}
{% for entry in folder_dir.children recursive %} {% if entry.url_path %} {% if url_for('slide', path=entry.url_path)+".dzi" != slide_url %}
{{ entry.name }}
{% endif %} {% endif %} {% endfor %}
Add image as a layer
{% endif %}
[Filter settings]
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