anndata>=0.8.0
treedata>=0.2.5
boto3>=1.12.18
click>=7.1.2
Flask>=3.0.0
Flask-Compress>=1.4.0
Flask-Cors>=3.0.9
Flask-RESTful>=0.3.6
flask-server-timing>=0.1.2
flask-talisman>=0.7.0
flatbuffers==2.0.7
flatten-dict>=0.2.0
fsspec>0.8.0
gunicorn>=20.0.4
h5py>=3.0.0
numba>=0.60.0
numpy==2.0.1
packaging>=20.0
pandas>=2.2.2
PyYAML>=5.4
requests>=2.22.0
s3fs==0.4.2
scipy>=1.4
setuptools

[annotate]
mlflow==2.16.0
scanpy

[prepare]
python-igraph>=0.8
louvain>=0.6
scanpy
umap-learn<0.5.0
