LICENSE
MANIFEST.in
README.md
pyproject.toml
backend/Makefile
backend/bedidx.c
backend/bgzf.c
backend/bgzf.h
backend/countmut_core.c
backend/countmut_core.h
backend/countmut_core_main.c
backend/countmut_expr.c
backend/countmut_expr.h
backend/faidx.c
backend/faidx.h
backend/hts.c
backend/hts.h
backend/ketopt.h
backend/khash.h
backend/kseq.h
backend/ksort.h
backend/kstdint.h
backend/kstring.h
backend/razf.c
backend/razf.h
backend/sam.c
backend/sam.h
countmut/__init__.py
countmut/backend.py
countmut/bam_tags.py
countmut/cli.py
countmut/core.py
countmut/model.py
countmut/utils.py
countmut.egg-info/PKG-INFO
countmut.egg-info/SOURCES.txt
countmut.egg-info/dependency_links.txt
countmut.egg-info/entry_points.txt
countmut.egg-info/requires.txt
countmut.egg-info/top_level.txt
countmut/_core/countmut_core
tests/test_cli.py
tests/test_core.py
tests/test_correctness.py
tests/test_unified.py
tests/test_utils.py