LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
docs/Makefile
docs/make.bat
docs/source/api.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/examples.rst
docs/source/index.rst
docs/source/scripts.rst
docs/source/usage.rst
docs/source/api/variant_mapper.rst
docs/source/examples/ensembl_mapper.nblink
docs/source/examples/norm.nblink
docs/source/examples/tabix_mapper.nblink
docs/source/mapping_files/installing_vep.rst
docs/source/mapping_files/mapping_background.rst
docs/source/mapping_files/mapping_files.rst
docs/source/scripts/bash_endpoints.rst
docs/source/scripts/python_endpoints.rst
resources/bin/README.md
resources/bin/build-gene-mapping.sh
resources/bin/build-variant-synonyms.sh
resources/bin/get-genomic-chunks.sh
resources/bin/make-genome-assemblies.py
resources/bin/make-genome-seq-from-mapper.py
resources/bin/make-mapping-set-simple.py
resources/bin/make-mapping-set.py
resources/bin/make-vep-ja.sh
resources/bin/merge-count-vcfs.sh
resources/bin/process-1000g.sh
resources/bin/process-alfa.sh
resources/bin/process-dbsnp.sh
resources/bin/process-gnomad.sh
resources/bin/process-gnomad2.sh
resources/bin/process-snpstats.sh
resources/bin/vcf-cat.sh
resources/bin/vcf-chrom-order.sh
resources/bin/vcf-count.sh
resources/bin/vcf-dumb-cat.sh
resources/bin/vcf-lift.sh
resources/bin/vcf-min-max.sh
resources/bin/vcf-reheader.sh
resources/bin/vcf-sort.sh
resources/ci_cd/README.md
resources/ci_cd/before_script.sh
resources/ci_cd/pages.sh
resources/ci_cd/pypi-upload.sh
resources/ci_cd/run_docker.sh
resources/ci_cd/run_pages.sh
resources/ci_cd/sphinx.txt
resources/conda/README.md
resources/conda/build/py310/LICENSE
resources/conda/build/py310/build.sh
resources/conda/build/py310/meta.yaml
resources/conda/build/py310/run_test.sh
resources/conda/build/py38/LICENSE
resources/conda/build/py38/build.sh
resources/conda/build/py38/meta.yaml
resources/conda/build/py38/run_test.sh
resources/conda/build/py39/LICENSE
resources/conda/build/py39/build.sh
resources/conda/build/py39/meta.yaml
resources/conda/build/py39/run_test.sh
resources/conda/envs/py310/conda_create.yaml
resources/conda/envs/py310/conda_update.yaml
resources/conda/envs/py38/conda_create.yaml
resources/conda/envs/py38/conda_update.yaml
resources/conda/envs/py39/conda_create.yaml
resources/conda/envs/py39/conda_update.yaml
resources/data_dict/README.md
resources/examples/README.md
resources/examples/ensembl_mapper.ipynb
resources/examples/norm.ipynb
resources/examples/tabix_mapper.ipynb
resources/images/README.md
tests/test_batch_reader.py
tests/test_imports.py
tests/test_mapper.py
tests/test_mapper_cl.py
tests/test_norm.py
tests/test_resolvers.py
tests/test_vcf_info.py
variant_mapper/__init__.py
variant_mapper/_version.py
variant_mapper/batch_reader.py
variant_mapper/command.py
variant_mapper/common.py
variant_mapper/constants.py
variant_mapper/examples.py
variant_mapper/mapper.py
variant_mapper/mapper_cl.py
variant_mapper/mappers.py
variant_mapper/new_mapper.py
variant_mapper/norm.py
variant_mapper/parsers.py
variant_mapper/resolvers.py
variant_mapper/vcf_info.py
variant_mapper.egg-info/PKG-INFO
variant_mapper.egg-info/SOURCES.txt
variant_mapper.egg-info/dependency_links.txt
variant_mapper.egg-info/entry_points.txt
variant_mapper.egg-info/requires.txt
variant_mapper.egg-info/top_level.txt
variant_mapper/map_file/__init__.py
variant_mapper/map_file/dbsnp/__init__.py
variant_mapper/map_file/dbsnp/clinvar.py
variant_mapper/map_file/dbsnp/crossmap.py
variant_mapper/map_file/dbsnp/download.py
variant_mapper/map_file/dbsnp/parse.py
variant_mapper/map_file/downloads/__init__.py
variant_mapper/map_file/downloads/common.py
variant_mapper/map_file/downloads/fix_split_counts.py
variant_mapper/map_file/downloads/format_alfa.py
variant_mapper/map_file/downloads/format_counts.py
variant_mapper/map_file/downloads/format_dbsnp.py
variant_mapper/map_file/downloads/format_eqtlgen.py
variant_mapper/map_file/downloads/format_snpstats.py
variant_mapper/map_file/downloads/merge_cadd.py
variant_mapper/map_file/downloads/merge_counts.py
variant_mapper/map_file/downloads/split_mapping.py