Vaccine Design Report

PATIENT INFO

{% for key, val in patient_info.items() %} {% endfor %}

{{ key }}

{{ val }}

{% include "templates/products.html" %} {% if ranked_candidates is defined %}{% include "templates/ranking.html" %}{% endif %}

COMMAND LINE ARGUMENTS

{% for key, val in args %} {% endfor %}

{{ key }}

{{ val }}

{% if input_json_file %}

Report generated from saved location: {{ input_json_file }}

{% endif %} {% if candidate_details | default(true) and variants %}

Candidate window details

Candidate context only. Targetable residues are highlighted; consult Emitted products for final sequences.

{% for v in variants %}
1. {% for key, val in v.variant_data.items() %} {% endfor %}

   {{ v.entity_label | default('Variant') }}	{{ v.short_description }}
   {{ key }}	{{ val }}

   
   

   {{ v.effect_label | default('Predicted Effect') }}

   {% for key, val in v.effect_data.items() %} {% endfor %}

   {{ key }}

   {{ val }}

   
   {% if v.databases %}

   Databases

   {% for key, val in v.databases.items() %} {% endfor %}

   {{ key }}

   {{ val }}

   
   {% endif %}

   {% for p in v.peptides %}

   1. {{ p.header_display_data.aa_before_mutation }}{{ p.header_display_data.aa_mutant }}{{ p.header_display_data.aa_after_mutation }}

      {% for key, val in p.peptide_data.items() %}{% endfor %}

      {{ key }}

      {{ val }}

      {% if include_manufacturability %}

      Candidate-window manufacturability

      {% for key, val in p.manufacturability_data.items() %}{% endfor %}

      {{ key }}

      {{ val }}

      {% endif %}

      Predicted target epitopes

      {% set epitope_rows = p.epitopes %} {% include "templates/epitope_table.html" %} {% if include_wt_epitopes %}

      Predicted self epitopes

      {% set epitope_rows = p.wt_epitopes %} {% include "templates/epitope_table.html" %} {% endif %}
   {% endfor %}
{% endfor %}

{% endif %} {% if reviewers %} {% for r in reviewers %} {% endfor %}

Reviewed By
{{ r }}

{% endif %}

Final Review
Name {{ final_review }} Signature Date