CHANGELOG.md
CITATION.cff
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
RELEASE_EVIDENCE.md
SECURITY.md
pyproject.toml
.github/workflows/ci.yml
.github/workflows/publish-pypi.yml
docs/ACTION_WIRING_MATRIX.md
docs/ADF_MACRO_LIFECYCLE.md
docs/API_STABILITY_POLICY.md
docs/BENCHMARK_SCENARIO_SUITE.md
docs/CAPSULE_TRANSFER_VALIDATION.md
docs/CAUSAL_INTERVENTION_PROTOCOL.md
docs/CAUSAL_VALIDATION_PROTOCOL.md
docs/CLAIM_CONTROL.md
docs/CLAIM_GATE_POLICY.md
docs/CLAIM_LADDER.md
docs/CONTRIBUTION_LEDGER.md
docs/DISCOVERY_EXPERIMENT_PROTOCOL.md
docs/DISCOVERY_GATE_PROTOCOL.md
docs/EVENT_GRAPH_AND_CAUSAL_PROTOCOL.md
docs/FEATURE_MATURITY_STATUS.md
docs/FEATURE_WIRING_MATRIX.md
docs/GENESIS_API_FOR_UI.md
docs/GENESIS_COMPATIBILITY_MATRIX.md
docs/GENESIS_FINAL_HARDENING.md
docs/GENESIS_RUNTIME_CONTRACT.md
docs/INNOVATION_PROTECTION.md
docs/LIBRARY_AS_TOOL_DIGEST_AND_CAPSULE_POLICY.md
docs/LLM_REVIEW_AND_RULE_API.md
docs/MULTISEED_EXPERIMENTS.md
docs/MUTATION_OPERATOR_MATURITY_MATRIX.md
docs/ODD_REPORTING.md
docs/OEE_LONG_HORIZON_PROTOCOL.md
docs/PHASE1_STRONG_CORE_ACCEPTANCE.md
docs/PHASE2_ARTIFACT_MANIFEST_SCHEMA.md
docs/PHASE2_CLAIM_GATE_POLICY.md
docs/PHASE2_EVIDENCE_PROTOCOL.md
docs/PHASE2_RUNTIME_WIRING_MATRIX.md
docs/PHASE2_SCIENTIFIC_EVIDENCE_LADDER.md
docs/PHASE2_STRONG_CLAIM_CHECKLIST.md
docs/PHASE3_EVIDENCE_PROTOCOL.md
docs/QD_DESCRIPTOR_GUIDE.md
docs/QD_SEARCH_LOOP.md
docs/REPLAY_AND_ARTIFACTS.md
docs/RULE_VALIDATION_AND_SECURITY.md
docs/SCIENTIFIC_CLAIM_LADDER.md
docs/SCIENTIFIC_EXPERIMENT_PROTOCOL.md
docs/SCIENTIFIC_LIMITS.md
docs/SCIENTIFIC_METHOD_NOTES.md
docs/SOCIAL_COLLECTIVE_INTELLIGENCE_PROTOCOL.md
docs/TRANSLATION_PROFILE_SEMANTIC_PROXY.md
docs/VARIABLE_GENOME_AND_STRUCTURAL_MUTATION.md
docs/api.md
docs/concepts.md
docs/extensibility.md
docs/genesis_causal_capsule_runtime.md
docs/initialization.md
docs/non_goals.md
docs/public_api_integration.md
docs/publishing.md
docs/release_checklist.md
docs/scientific_freshness_matrix_integration.md
docs/design_notes/a25_final_scientific_library_hardening.md
docs/design_notes/a25_metadata_evidence_validation_context.md
docs/design_notes/a25_strengthened_final_acceptance_patch.md
docs/design_notes/a35_developer_evidence_chain_hardening.md
docs/design_notes/phase2_strong_scientific_layer.md
docs/design_notes/strong_library_phase1.md
examples/_path_bootstrap.py
examples/causal_replay_demo.py
examples/custom_action.py
examples/diversity_metrics.py
examples/experiment_quick.py
examples/genesis_ablation_protocol.py
examples/genesis_adf.py
examples/genesis_api_audit.py
examples/genesis_api_stability_map.py
examples/genesis_artifact_hygiene.py
examples/genesis_benchmark_scenario.py
examples/genesis_benchmark_smoke.py
examples/genesis_capsule_hook.py
examples/genesis_capsule_transfer.py
examples/genesis_capsule_utility_pilot.py
examples/genesis_causal_graph.py
examples/genesis_claim_audit.py
examples/genesis_claim_downgrade_rules.py
examples/genesis_custom_action_status.py
examples/genesis_custom_elements.py
examples/genesis_custom_fitness_signal.py
examples/genesis_custom_genome_spec.py
examples/genesis_custom_scheduler_topology.py
examples/genesis_custom_substrate_rules.py
examples/genesis_d0_baseline.py
examples/genesis_discovery_hooks.py
examples/genesis_discovery_witness.py
examples/genesis_docs_consistency.py
examples/genesis_documentation_audit.py
examples/genesis_evidence_bundle.py
examples/genesis_evidence_completeness.py
examples/genesis_evidence_lineage.py
examples/genesis_evidence_quality_score.py
examples/genesis_evolution_pilot.py
examples/genesis_external_replication_record.py
examples/genesis_final_examples_matrix.py
examples/genesis_final_gate_summary.py
examples/genesis_final_non_claim_statement.py
examples/genesis_final_release_manifest.py
examples/genesis_foundation.py
examples/genesis_integration_end_to_end_validation.py
examples/genesis_limitations.py
examples/genesis_mature_alpha_readiness.py
examples/genesis_memory.py
examples/genesis_memory_delayed_reward_pilot.py
examples/genesis_paper_evidence_bundle.py
examples/genesis_phase3_validation_smoke.py
examples/genesis_phase_b_final_smoke.py
examples/genesis_population.py
examples/genesis_pre_registered_metric.py
examples/genesis_qd_archive_hardened.py
examples/genesis_qd_archive_hook.py
examples/genesis_qd_selection_pilot.py
examples/genesis_release_candidate_checklist.py
examples/genesis_release_readiness_profile.py
examples/genesis_reproducibility_summary.py
examples/genesis_research_validation_bundle.py
examples/genesis_scenario_suite.py
examples/genesis_scientific_evidence_pack.py
examples/genesis_social_partner_pilot.py
examples/genesis_statistical_protocol.py
examples/genesis_stigmergy_layer.py
examples/genesis_strong_library_phase2_smoke.py
examples/genesis_supply_chain_audit.py
examples/genesis_toolchain_pilot.py
examples/genesis_unified_smoke_run.py
examples/genesis_validation_matrix.py
examples/genesis_validation_pack.py
examples/lineage_seeded_agents.py
examples/object_dict_roundtrip.py
examples/plugin_action_skeleton.py
examples/profiled_agents.py
examples/quick_factory.py
examples/quickstart.py
examples/scenario_config.py
examples/simulation_multi_agent.py
examples/world_event_timeline.py
examples/world_objects.py
src/codontrace/__init__.py
src/codontrace/_numeric.py
src/codontrace/_types.py
src/codontrace/actions.py
src/codontrace/agent.py
src/codontrace/codon.py
src/codontrace/energy.py
src/codontrace/errors.py
src/codontrace/experiment.py
src/codontrace/factory.py
src/codontrace/genome.py
src/codontrace/initialization.py
src/codontrace/mutation.py
src/codontrace/plugins.py
src/codontrace/py.typed
src/codontrace/recorder.py
src/codontrace/replay.py
src/codontrace/rng.py
src/codontrace/scenario.py
src/codontrace/scheduling.py
src/codontrace/simulation.py
src/codontrace/specs.py
src/codontrace/topology.py
src/codontrace/trace.py
src/codontrace/world.py
src/codontrace.egg-info/PKG-INFO
src/codontrace.egg-info/SOURCES.txt
src/codontrace.egg-info/dependency_links.txt
src/codontrace.egg-info/requires.txt
src/codontrace.egg-info/top_level.txt
src/codontrace/genesis/__init__.py
src/codontrace/genesis/ablation.py
src/codontrace/genesis/adf.py
src/codontrace/genesis/adf_lifecycle.py
src/codontrace/genesis/adf_runtime.py
src/codontrace/genesis/adf_validation.py
src/codontrace/genesis/analyst.py
src/codontrace/genesis/api_audit.py
src/codontrace/genesis/artifacts.py
src/codontrace/genesis/atp.py
src/codontrace/genesis/behavior.py
src/codontrace/genesis/benchmark_suite.py
src/codontrace/genesis/birth.py
src/codontrace/genesis/campaign.py
src/codontrace/genesis/canonical.py
src/codontrace/genesis/capsule.py
src/codontrace/genesis/capsule_validation.py
src/codontrace/genesis/causal_graph.py
src/codontrace/genesis/causal_runtime.py
src/codontrace/genesis/causal_validation.py
src/codontrace/genesis/checkpointing.py
src/codontrace/genesis/claim_audit.py
src/codontrace/genesis/claim_gate.py
src/codontrace/genesis/codon_table.py
src/codontrace/genesis/collective_intelligence.py
src/codontrace/genesis/contribution_ledger.py
src/codontrace/genesis/controls.py
src/codontrace/genesis/curriculum.py
src/codontrace/genesis/death.py
src/codontrace/genesis/diagnostics.py
src/codontrace/genesis/discovery.py
src/codontrace/genesis/discovery_gate.py
src/codontrace/genesis/discovery_protocol.py
src/codontrace/genesis/discovery_runner.py
src/codontrace/genesis/discovery_witness.py
src/codontrace/genesis/elements.py
src/codontrace/genesis/engine.py
src/codontrace/genesis/event_graph.py
src/codontrace/genesis/evidence.py
src/codontrace/genesis/evidence_bundle.py
src/codontrace/genesis/evidence_consistency.py
src/codontrace/genesis/evidence_lineage.py
src/codontrace/genesis/evidence_registry.py
src/codontrace/genesis/evidence_status.py
src/codontrace/genesis/evidence_validation.py
src/codontrace/genesis/evolution.py
src/codontrace/genesis/example_smoke.py
src/codontrace/genesis/experiment.py
src/codontrace/genesis/final_release_manifest.py
src/codontrace/genesis/fitness.py
src/codontrace/genesis/frames.py
src/codontrace/genesis/generalization.py
src/codontrace/genesis/genome_spec.py
src/codontrace/genesis/innovation_protection.py
src/codontrace/genesis/intervention.py
src/codontrace/genesis/learning.py
src/codontrace/genesis/limitations.py
src/codontrace/genesis/lineage_consistency.py
src/codontrace/genesis/liveness.py
src/codontrace/genesis/mature_alpha.py
src/codontrace/genesis/memory.py
src/codontrace/genesis/multiseed.py
src/codontrace/genesis/odd.py
src/codontrace/genesis/open_endedness.py
src/codontrace/genesis/organism.py
src/codontrace/genesis/paper_companion.py
src/codontrace/genesis/phase1_runtime_maturity.py
src/codontrace/genesis/phase_b_scientific_maturity.py
src/codontrace/genesis/plugins.py
src/codontrace/genesis/population.py
src/codontrace/genesis/population_runner.py
src/codontrace/genesis/public_api_manifest.py
src/codontrace/genesis/qd_descriptors.py
src/codontrace/genesis/qd_search.py
src/codontrace/genesis/quality_diversity.py
src/codontrace/genesis/release_candidate.py
src/codontrace/genesis/release_readiness.py
src/codontrace/genesis/replay.py
src/codontrace/genesis/replay_integrity.py
src/codontrace/genesis/replay_policy_audit.py
src/codontrace/genesis/research_validation.py
src/codontrace/genesis/review.py
src/codontrace/genesis/ribosome.py
src/codontrace/genesis/role.py
src/codontrace/genesis/rules.py
src/codontrace/genesis/runtime_profiles.py
src/codontrace/genesis/runtime_wiring_audit.py
src/codontrace/genesis/scale_performance.py
src/codontrace/genesis/scenario_suite.py
src/codontrace/genesis/scientific_evidence.py
src/codontrace/genesis/selection.py
src/codontrace/genesis/social.py
src/codontrace/genesis/statistical_protocol.py
src/codontrace/genesis/statistical_report.py
src/codontrace/genesis/status.py
src/codontrace/genesis/structural_mutation.py
src/codontrace/genesis/substrate.py
src/codontrace/genesis/substrate_runtime.py
src/codontrace/genesis/swarm_metrics.py
src/codontrace/genesis/toolchain.py
src/codontrace/genesis/translation_profile.py
src/codontrace/genesis/validation.py
src/codontrace/genesis/validation_matrix.py
src/codontrace/metrics/__init__.py
src/codontrace/metrics/diversity.py
tests/__init__.py
tests/test_a35_binding_release_identity_aliases.py
tests/test_action_registry.py
tests/test_agent.py
tests/test_agent_explain_local.py
tests/test_agent_quick.py
tests/test_api_signature.py
tests/test_attempt_cost_model.py
tests/test_codon.py
tests/test_contract_polish_a8.py
tests/test_custom_action_replay.py
tests/test_custom_actions.py
tests/test_custom_cells.py
tests/test_developer_experience.py
tests/test_energy.py
tests/test_energy_effects.py
tests/test_errors.py
tests/test_examples.py
tests/test_experiment.py
tests/test_explanation_adversarial.py
tests/test_export_import.py
tests/test_final_scenario_contract.py
tests/test_genesis_a13_remaining_fixes.py
tests/test_genesis_a15_regressions.py
tests/test_genesis_a16_regressions.py
tests/test_genesis_a18_hardening.py
tests/test_genesis_a19_qd_ablation_protocol.py
tests/test_genesis_a20_api_hardening.py
tests/test_genesis_a21_research_validation_rc.py
tests/test_genesis_a22_rc_scientific_evidence.py
tests/test_genesis_a23_mature_alpha.py
tests/test_genesis_a24_finalization.py
tests/test_genesis_a25_directive_runtime_fixes.py
tests/test_genesis_a26_evolution_capable_patch.py
tests/test_genesis_a27_final_hardening.py
tests/test_genesis_a28_science_hardening.py
tests/test_genesis_a29_programmer_hardening.py
tests/test_genesis_a30_final_audit_hardening.py
tests/test_genesis_a31_source_checkout_portability.py
tests/test_genesis_a32_birth_mutation_inheritance.py
tests/test_genesis_a33_death_energy_export_hardening.py
tests/test_genesis_a34_deadcode_wiring_scientific_hardening.py
tests/test_genesis_a35_developer_evidence_chain_hardening.py
tests/test_genesis_action_status_registry.py
tests/test_genesis_adf_codon_extension.py
tests/test_genesis_adf_genome_spec.py
tests/test_genesis_adf_patterns.py
tests/test_genesis_adf_scoring.py
tests/test_genesis_adf_serialization.py
tests/test_genesis_atp.py
tests/test_genesis_behavior_descriptor.py
tests/test_genesis_capsule_emission.py
tests/test_genesis_capsule_hooks.py
tests/test_genesis_capsule_read_adoption.py
tests/test_genesis_capsule_store.py
tests/test_genesis_capsule_transfer_metrics.py
tests/test_genesis_causal_graph.py
tests/test_genesis_causal_graph_atp.py
tests/test_genesis_causal_graph_memory.py
tests/test_genesis_causal_graph_serialization.py
tests/test_genesis_causal_graph_trace_update.py
tests/test_genesis_causal_mechanism_hardening.py
tests/test_genesis_causal_mechanism_runtime_wiring_integrity.py
tests/test_genesis_codon_table.py
tests/test_genesis_codon_table_spec.py
tests/test_genesis_collective_intelligence_claim_gate.py
tests/test_genesis_curriculum_environment_coevolution.py
tests/test_genesis_discovery_hooks.py
tests/test_genesis_discovery_witness_qd.py
tests/test_genesis_dual_atp.py
tests/test_genesis_dynamic_vocabulary.py
tests/test_genesis_element_registry.py
tests/test_genesis_elements.py
tests/test_genesis_extensibility_backcompat.py
tests/test_genesis_extensibility_no_app_drift.py
tests/test_genesis_final_runtime_wiring.py
tests/test_genesis_fitness.py
tests/test_genesis_fitness_signal_registry.py
tests/test_genesis_generalization_snapshots.py
tests/test_genesis_genome_spec.py
tests/test_genesis_integration_adf_runtime_unification.py
tests/test_genesis_integration_end_to_end_validation.py
tests/test_genesis_integration_evidence_consistency.py
tests/test_genesis_integration_examples_compatibility.py
tests/test_genesis_integration_public_api_manifest.py
tests/test_genesis_integration_public_api_unification.py
tests/test_genesis_integration_reference_integrity.py
tests/test_genesis_integration_release_zip_integrity.py
tests/test_genesis_integration_runtime_wiring.py
tests/test_genesis_integration_scientific_freshness_matrix.py
tests/test_genesis_learning.py
tests/test_genesis_lineage.py
tests/test_genesis_liveness.py
tests/test_genesis_memory.py
tests/test_genesis_mutation.py
tests/test_genesis_mutation_genome_spec.py
tests/test_genesis_mutation_operator_maturity.py
tests/test_genesis_organism.py
tests/test_genesis_package_hygiene.py
tests/test_genesis_phase1_adf_runtime_execution.py
tests/test_genesis_phase1_capsule_ttl_locality.py
tests/test_genesis_phase1_energy_effect_organism.py
tests/test_genesis_phase1_from_bits_spec.py
tests/test_genesis_phase1_population_stigmergy_integration.py
tests/test_genesis_phase1_runtime_contract.py
tests/test_genesis_phase1_runtime_maturity_report.py
tests/test_genesis_phase2_adf_usefulness_claim_thresholds.py
tests/test_genesis_phase2_claim_digest_consistency.py
tests/test_genesis_phase2_finite_guards.py
tests/test_genesis_phase2_gap_public_apis.py
tests/test_genesis_phase2_manifest_validation_strict.py
tests/test_genesis_phase2_semantic_proxy_engine_wiring.py
tests/test_genesis_phase_b_no_collapsed_alias_schemas.py
tests/test_genesis_phase_b_public_api_bindings.py
tests/test_genesis_phase_b_scientific_maturity_report.py
tests/test_genesis_pilot_strengthened_v3.py
tests/test_genesis_plugin_api_safety.py
tests/test_genesis_population.py
tests/test_genesis_population_capsule_audit.py
tests/test_genesis_population_memory_audit.py
tests/test_genesis_reproduction.py
tests/test_genesis_result_consistency_validator.py
tests/test_genesis_ribosome.py
tests/test_genesis_role_detection_runtime.py
tests/test_genesis_scale_ladder_benchmark.py
tests/test_genesis_scheduler_protocol.py
tests/test_genesis_social_behavior_descriptor_counts.py
tests/test_genesis_social_heldout_distinctness.py
tests/test_genesis_stigmergy_layer.py
tests/test_genesis_substrate.py
tests/test_genesis_substrate_physics_config.py
tests/test_genesis_substrate_rule_config.py
tests/test_genesis_swarm_metrics_controls.py
tests/test_genesis_topology_protocol.py
tests/test_genesis_trace_memory_audit.py
tests/test_genesis_v3_core_regression_patch.py
tests/test_genesis_v3_rereview_integrity.py
tests/test_genesis_world_mapping.py
tests/test_genome.py
tests/test_import.py
tests/test_initialization.py
tests/test_ledger_refs.py
tests/test_mutation.py
tests/test_mutation_fuzz.py
tests/test_no_side_effects.py
tests/test_object_serialization.py
tests/test_plugins.py
tests/test_publish_readiness_a7.py
tests/test_replay.py
tests/test_replay_hash.py
tests/test_replay_snapshot_continuity.py
tests/test_rng.py
tests/test_scenario_diversity.py
tests/test_scenario_runtime_logic_a10.py
tests/test_scenario_runtime_logic_a11.py
tests/test_semantics_docs_polish_a9.py
tests/test_simulation.py
tests/test_timeline_replay.py
tests/test_trace.py
tests/test_types.py
tests/test_world.py
tests/test_world_events.py
tests/test_world_objects.py
tests/genesis/test_capsule_population_runtime_phase2.py
tests/genesis/test_causal_graph_organism_integration.py
tests/genesis/test_memory_to_causal_runtime.py
tests/genesis_gates/__init__.py
tests/genesis_gates/test_action_wiring_matrix.py
tests/genesis_gates/test_artifact_manifest_claim_ready_schema.py
tests/genesis_gates/test_behavior_fitness_breakdown.py
tests/genesis_gates/test_claim_gate_strong_claim_ladder.py
tests/genesis_gates/test_discovery_runner_contract.py
tests/genesis_gates/test_engine_spec_end_to_end.py
tests/genesis_gates/test_evolution_capacity_overrides_reproduction_capacity.py
tests/genesis_gates/test_full_connection_smoke.py
tests/genesis_gates/test_genesis_compatibility_matrix_exists.py
tests/genesis_gates/test_llm_review_api_contract.py
tests/genesis_gates/test_phase3_no_legacy_shadow_definitions.py
tests/genesis_gates/test_phase3_polish_release_identity_and_manifest.py
tests/genesis_gates/test_phase3_polish_rule_review_spec_hooks.py
tests/genesis_gates/test_phase3_polish_substrate_bridge.py
tests/genesis_gates/test_population_selection_policy.py
tests/genesis_gates/test_post_review_manifest_replay_review_rule_contracts.py
tests/genesis_gates/test_qd_population_integration.py
tests/genesis_gates/test_reproduction_child_inherits_learning_runtime_config.py
tests/genesis_gates/test_result_public_surface_contract.py
tests/genesis_gates/test_rule_validation_pipeline.py
tests/genesis_gates/test_run_manifest_replay_bundle.py
tests/genesis_gates/test_toolchain_primitives_and_failures.py
tests/release/test_release_artifact_has_no_cache_files.py
tests/release/test_release_manifest_and_mypy_optional_deps.py
tests/science_gates/__init__.py
tests/science_gates/test_a25_final_scientific_library_hardening.py
tests/science_gates/test_a25_strengthened_acceptance_patch.py
tests/science_gates/test_adf_expanded_primitive_source_records.py
tests/science_gates/test_adf_macro_lifecycle.py
tests/science_gates/test_advanced_adf_runtime_validation.py
tests/science_gates/test_advanced_capsule_discovery_multiseed.py
tests/science_gates/test_advanced_causal_validation.py
tests/science_gates/test_advanced_manifest_rules_claims.py
tests/science_gates/test_advanced_qd_search_loop.py
tests/science_gates/test_benchmark_scenario_suite.py
tests/science_gates/test_causal_intervention_protocol.py
tests/science_gates/test_claim_gate_ignores_user_supplied_claim_gate_decision_digest.py
tests/science_gates/test_discovery_gate_requires_d0_shadow_persistence_ablation.py
tests/science_gates/test_evidence_validation_context_to_dict_includes_semantic_proxy_digests.py
tests/science_gates/test_evidence_validation_protocol_execution_is_lazy.py
tests/science_gates/test_genesis_odd_report.py
tests/science_gates/test_integration_claim_gate_no_fake_positive.py
tests/science_gates/test_intervention_supported_requires_validated_intervention_result_artifact.py
tests/science_gates/test_metadata_only_intervention_supported_rejected.py
tests/science_gates/test_metadata_only_oee_candidate_rejected.py
tests/science_gates/test_multiseed_experiment_runner.py
tests/science_gates/test_oee_candidate_requires_validated_oee_report_artifact.py
tests/science_gates/test_phase2_strict_acceptance_patch.py
tests/science_gates/test_phase2_strong_acceptance_patch.py
tests/science_gates/test_phase3_digest_and_release_pack_strictness.py
tests/science_gates/test_phase3_examples_no_fake_evidence.py
tests/science_gates/test_phase3_final_acceptance_blockers.py
tests/science_gates/test_phase3_maximum_validation_public_api.py
tests/science_gates/test_phase3_oee_threshold_consistency.py
tests/science_gates/test_qd_user_defined_descriptors.py
tests/science_gates/test_replay_digest_policy_sweep.py
tests/science_gates/test_replay_integrity_resolve_class_path_validation.py
tests/science_gates/test_scientific_claim_gate.py
tests/science_gates/test_scientific_protocol_executed_false_for_metadata_only_pseudo_evidence.py
tests/science_gates/test_statistical_report_bootstrap_ci.py
tests/science_gates/test_strong_library_phase1_descriptor_benchmark_manifest.py
tests/science_gates/test_strong_library_phase1_fitness_qd_rng.py
tests/science_gates/test_strong_library_phase1_source_map.py
tests/science_gates/test_strong_library_phase2_adf_macro.py
tests/science_gates/test_strong_library_phase2_claim_manifest.py
tests/science_gates/test_strong_library_phase2_contribution_innovation.py
tests/science_gates/test_strong_library_phase2_event_oee_translation.py
tests/science_gates/test_strong_library_phase2_runtime_completion.py
tests/science_gates/test_strong_library_phase2_variable_genome.py
tests/science_gates/test_substrate_runtime_bridge.py
tools/audit_evidence_consistency.py
tools/audit_examples_integration.py
tools/audit_genesis_references.py
tools/audit_package_hygiene.py
tools/audit_release_zip.py
tools/audit_runtime_wiring.py
tools/build_clean_release_zip.py