__pycache__/
*.py[cod]
.pytest_cache/
.ipynb_checkpoints/
build/
dist/
*.egg-info/
.venv/
venv/
.DS_Store
.vscode/
.idea/

# never commit cohort data, ontology dumps or analysis output
*.obo
*.hpoa
*.xlsx
*.csv
*.png
*.pdf
*.svg
# ... except the README figures produced by the synthetic example
!examples/figures/*.png
# benchmark corpora are cached in ~/.cache/phenotopo, never in the repository
benchmarks/**/data/
# ... but the derived results of the benchmarks are the evidence, so they are kept
!benchmarks/**/*.csv
!benchmarks/**/figures/*.png
