Metadata-Version: 2.4
Name: tcdo_pg_tools
Version: 0.0.7b0
Summary: Commandline tools to support proteogenomics analyses at MSK TCDO and beyond
Author-email: Asher Preska Steinberg <preskaa@mskcc.org>
Maintainer-email: Asher Preska Steinberg <preskaa@mskcc.org>
License: Apache-2.0
Project-URL: bugs, https://github.com/shahcompbio/tcdo_pg_tools/issues
Project-URL: changelog, https://github.com/shahcompbio/tcdo_pg_tools/blob/master/changelog.md
Project-URL: homepage, https://github.com/shahcompbio/tcdo_pg_tools
Description-Content-Type: text/x-rst
License-File: LICENSE
License-File: AUTHORS.rst
Requires-Dist: sphinx
Requires-Dist: sphinx-click
Requires-Dist: pandas>=2.2.3
Requires-Dist: numpy>=2.2.6
Requires-Dist: click>=8.2.1
Requires-Dist: tqdm>=4.67.1
Requires-Dist: numba>=0.61.2
Requires-Dist: marsilea>=0.5.3
Requires-Dist: matplotlib>=3.10.3
Provides-Extra: dev
Requires-Dist: coverage; extra == "dev"
Requires-Dist: mypy; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: ruff; extra == "dev"
Dynamic: license-file

=============
tcdo-pg-tools
=============


.. image:: https://img.shields.io/pypi/v/tcdo_pg_tools.svg
        :target: https://pypi.python.org/pypi/tcdo_pg_tools

.. image:: https://readthedocs.org/projects/tcdo-pg-tools/badge/?version=latest
        :target: https://tcdo-pg-tools.readthedocs.io/en/latest/?version=latest
        :alt: Documentation Status




Commandline tools to support proteogenomics analyses at MSK TCDO and beyond


* Free software: Apache Software License 2.0
* Documentation: https://tcdo-pg-tools.readthedocs.io.


Features
--------

* Merging RNA fusions across multiple samples which were called by CTAT-LR-Fusion or processed using FusionInspector.
  Currently also needs a metadata sheet from our internal isabl_utils package.
* calculation of AA seq coverage across multiple enzymes using fragpipe results

Credits
-------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage
