mriqc.workflows package

Submodules

mriqc.workflows.anatomical module

A QC workflow for anatomical MRI

mriqc.workflows.anatomical.anat_qc_workflow(name='aMRIQC', settings=None, sub_list=None)[source]

The anatomical quality control workflow

mriqc.workflows.anatomical.brainmsk_wf(name='BrainMaskWorkflow')[source]

Computes a brain mask from the original T1 and the skull-stripped

mriqc.workflows.anatomical.mri_reorient_wf(name='ReorientWorkflow')[source]

A workflow to reorient images to ‘RPI’ orientation

mriqc.workflows.anatomical.skullstrip_wf(name='SkullStripWorkflow')[source]

Skull-stripping workflow

mriqc.workflows.anatomical.slice_head_mask(in_file, in_coords, out_file=None)[source]

mriqc.workflows.core module

The core module combines the existing workflows

mriqc.workflows.core.qc_workflows(settings=None, subjects=None)[source]

The CRN quality control workflows

mriqc.workflows.functional module

A QC workflow for fMRI data

mriqc.workflows.functional.fmri_bmsk_workflow(name='fMRIBrainMask', use_bet=False)[source]

Comute brain mask of an fmri dataset

mriqc.workflows.functional.fmri_hmc_workflow(name='fMRI_HMC', st_correct=False)[source]

A head motion correction (HMC) workflow for functional scans

mriqc.workflows.functional.fmri_qc_workflow(name='fMRIQC', sub_list=None, settings=None)[source]

The fMRI qc workflow

mriqc.workflows.utils module

mriqc.workflows.utils.fmri_getidx(in_file, start_idx, stop_idx)[source]

Module contents