LICENSE
README.md
setup.py
domd_cgbuilder/__init__.py
domd_cgbuilder/_conf_gen.py
domd_cgbuilder/cg_ff.py
domd_cgbuilder/cg_ff_old.py
domd_cgbuilder/cg_mol.py
domd_cgbuilder/HSP_predictor/__init__.py
domd_cgbuilder/HSP_predictor/hsp_models.py
domd_cgbuilder/HSP_predictor/models/__init__.py
domd_database/__init__.py
domd_forcefield/__init__.py
domd_forcefield/charge_model.py
domd_forcefield/forcefield.py
domd_forcefield/functions.py
domd_forcefield/gaff/__init__.py
domd_forcefield/gaff/database.py
domd_forcefield/gaff/gaff.py
domd_forcefield/gaff/gaff_db.py
domd_forcefield/gaff/gaff_types.py
domd_forcefield/gaff/ml.py
domd_forcefield/oplsaa/__init__.py
domd_forcefield/oplsaa/database.py
domd_forcefield/oplsaa/ml.py
domd_forcefield/oplsaa/opls.py
domd_forcefield/oplsaa/opls_db.py
domd_forcefield/oplsaa/opls_types.py
domd_forcefield/oplsaa/ml_functions/__init__.py
domd_forcefield/oplsaa/ml_functions/models.py
domd_toolkit.egg-info/PKG-INFO
domd_toolkit.egg-info/SOURCES.txt
domd_toolkit.egg-info/dependency_links.txt
domd_toolkit.egg-info/entry_points.txt
domd_toolkit.egg-info/requires.txt
domd_toolkit.egg-info/top_level.txt
domd_tools/__init__.py
domd_tools/aa_builder.py
domd_tools/coarse_grain.py
domd_tools/force_field.py
domd_tools/gmx_output.py
domd_tools/manage_db.py
domd_topology/__init__.py
domd_topology/_mapping.py
domd_topology/functions.py
domd_topology/reactor.py
domd_topology/reactor_old.py
domd_xyz/__init__.py
domd_xyz/embed_molecule.py
domd_xyz/embed/__init__.py
domd_xyz/embed/embed_with_cg_xyz.py
domd_xyz/embed/optimize_orientation.py
misc/__init__.py
misc/aa_molecule.py
misc/cg_system.py
misc/draw.py
misc/logger.py
misc/io/__init__.py
misc/io/assemble.py
misc/io/gmx_reader.py
misc/io/gmx_writer.py
misc/io/xml_reader.py
misc/io/xml_writer.py
tests/tests.py