Metadata-Version: 2.4
Name: czb-zarr-challenge
Version: 0.1.0
Summary: API + CLI for OME-Zarr microscopy segmentation/analysis
Home-page: https://github.com/audreychun/czb-zarr-challenge
Author: Audrey Chun
Author-email: Audrey Chun <audreychun@berkeley.edu>
Requires-Python: >=3.11
Description-Content-Type: text/markdown

# CZB-zarr-challenge

TODO: TEST THIS OUT STARTING FROM THE BEGINNING AND MAKE SURE EVERYTHING WORKS!

first, create a new environment using the requirements.py file. command:

from the base folder (CZB_coding_challenge)

First, download data:
data folder should just be empty when first uploaded into the repo
KazanskyStar command:
20241107 command:


iohub folder should not exist prior to this - will be pip installed or git cloned
from base folder:
`git clone https://github.com/czbiohub-sf/iohub.git`
`pip install ./iohub`

Task 1 deliverables:
()
()


API:

To segment ()
Run () from scripts/(). 
Output will be in outputs/().


CHECK THAT EACH SCRIPT AND EACH OUTPUT HAS BEEN COVERED HERE!
