README.md
pyproject.toml
./gp_agent_tool/compute_dataset_feature.py
./gp_agent_tool/config.py
./gp_agent_tool/llm_client.py
./gp_agent_tool/logging_utils.py
./gp_agent_tool/main.py
./gp_agent_tool/experience/create_masked_dataset_summary.py
./gp_agent_tool/experience/dataset_summary_info.py
./gp_agent_tool/experience/experience_info.py
./gp_agent_tool/experience/get_matched_experience.py
./gp_agent_tool/read_agent/__init__.py
./gp_agent_tool/read_agent/nodes.py
./gp_agent_tool/read_agent/prompts.py
./gp_agent_tool/read_agent/python_repl_tool.py
./gp_agent_tool/read_agent/state.py
./gp_agent_tool/read_agent/workflow.py
./gpbench/__init__.py
./gpbench/_selftest.py
./gpbench/method_class/__init__.py
./gpbench/method_class/BayesA/BayesA_class.py
./gpbench/method_class/BayesA/__init__.py
./gpbench/method_class/BayesA/_bayesfromR.py
./gpbench/method_class/BayesA/_param_free_base_model.py
./gpbench/method_class/BayesA/bayesAfromR.py
./gpbench/method_class/BayesB/BayesB_class.py
./gpbench/method_class/BayesB/__init__.py
./gpbench/method_class/BayesB/_bayesfromR.py
./gpbench/method_class/BayesB/_param_free_base_model.py
./gpbench/method_class/BayesB/bayesBfromR.py
./gpbench/method_class/BayesC/BayesC_class.py
./gpbench/method_class/BayesC/__init__.py
./gpbench/method_class/BayesC/_bayesfromR.py
./gpbench/method_class/BayesC/_param_free_base_model.py
./gpbench/method_class/BayesC/bayesCfromR.py
./gpbench/method_class/CropARNet/CropARNet_class.py
./gpbench/method_class/CropARNet/CropARNet_he_class.py
./gpbench/method_class/CropARNet/__init__.py
./gpbench/method_class/CropARNet/base_CropARNet_class.py
./gpbench/method_class/Cropformer/Cropformer_class.py
./gpbench/method_class/Cropformer/__init__.py
./gpbench/method_class/Cropformer/cropformer_he_class.py
./gpbench/method_class/DL_GWAS/DL_GWAS_class.py
./gpbench/method_class/DL_GWAS/DL_GWAS_he_class.py
./gpbench/method_class/DL_GWAS/__init__.py
./gpbench/method_class/DNNGP/DNNGP_class.py
./gpbench/method_class/DNNGP/DNNGP_he_class.py
./gpbench/method_class/DNNGP/__init__.py
./gpbench/method_class/DNNGP/base_dnngp_class.py
./gpbench/method_class/DeepCCR/DeepCCR_class.py
./gpbench/method_class/DeepCCR/DeepCCR_he_class.py
./gpbench/method_class/DeepCCR/__init__.py
./gpbench/method_class/DeepCCR/base_DeepCCR_class.py
./gpbench/method_class/DeepGS/DeepGS_class.py
./gpbench/method_class/DeepGS/DeepGS_he_class.py
./gpbench/method_class/DeepGS/__init__.py
./gpbench/method_class/DeepGS/base_deepgs_class.py
./gpbench/method_class/EIR/EIR_class.py
./gpbench/method_class/EIR/EIR_he_class.py
./gpbench/method_class/EIR/__init__.py
./gpbench/method_class/EIR/utils/__init__.py
./gpbench/method_class/EIR/utils/array_output_modules.py
./gpbench/method_class/EIR/utils/common.py
./gpbench/method_class/EIR/utils/lcl_layers.py
./gpbench/method_class/EIR/utils/logging.py
./gpbench/method_class/EIR/utils/mlp_layers.py
./gpbench/method_class/EIR/utils/models_locally_connected.py
./gpbench/method_class/EIR/utils/transformer_models.py
./gpbench/method_class/ElasticNet/ElasticNet_class.py
./gpbench/method_class/ElasticNet/ElasticNet_he_class.py
./gpbench/method_class/ElasticNet/__init__.py
./gpbench/method_class/G2PDeep/G2PDeep_he_class.py
./gpbench/method_class/G2PDeep/G2Pdeep_class.py
./gpbench/method_class/G2PDeep/__init__.py
./gpbench/method_class/G2PDeep/base_G2PDeep_class.py
./gpbench/method_class/GBLUP/GBLUP_class.py
./gpbench/method_class/GBLUP/__init__.py
./gpbench/method_class/GEFormer/GEFormer_class.py
./gpbench/method_class/GEFormer/GEFormer_he_class.py
./gpbench/method_class/GEFormer/__init__.py
./gpbench/method_class/GEFormer/gMLP_class.py
./gpbench/method_class/LightGBM/LightGBM_class.py
./gpbench/method_class/LightGBM/LightGBM_he_class.py
./gpbench/method_class/LightGBM/__init__.py
./gpbench/method_class/RF/RF_GPU_class.py
./gpbench/method_class/RF/RF_GPU_he_class.py
./gpbench/method_class/RF/__init__.py
./gpbench/method_class/SVC/SVC_GPU.py
./gpbench/method_class/SVC/SVC_GPU_he.py
./gpbench/method_class/SVC/__init__.py
./gpbench/method_class/SoyDNGP/AlexNet_206_class.py
./gpbench/method_class/SoyDNGP/SoyDNGP_class.py
./gpbench/method_class/SoyDNGP/SoyDNGP_he_class.py
./gpbench/method_class/SoyDNGP/__init__.py
./gpbench/method_class/XGBoost/XGboost_GPU_class.py
./gpbench/method_class/XGBoost/XGboost_GPU_he_class.py
./gpbench/method_class/XGBoost/__init__.py
./gpbench/method_class/rrBLUP/__init__.py
./gpbench/method_class/rrBLUP/rrBLUP_class.py
./gpbench/method_reg/__init__.py
./gpbench/method_reg/BayesA/BayesA.py
./gpbench/method_reg/BayesA/__init__.py
./gpbench/method_reg/BayesA/_bayesfromR.py
./gpbench/method_reg/BayesA/_param_free_base_model.py
./gpbench/method_reg/BayesA/bayesAfromR.py
./gpbench/method_reg/BayesB/BayesB.py
./gpbench/method_reg/BayesB/__init__.py
./gpbench/method_reg/BayesB/_bayesfromR.py
./gpbench/method_reg/BayesB/_param_free_base_model.py
./gpbench/method_reg/BayesB/bayesBfromR.py
./gpbench/method_reg/BayesC/BayesC.py
./gpbench/method_reg/BayesC/__init__.py
./gpbench/method_reg/BayesC/_bayesfromR.py
./gpbench/method_reg/BayesC/_param_free_base_model.py
./gpbench/method_reg/BayesC/bayesCfromR.py
./gpbench/method_reg/CropARNet/CropARNet.py
./gpbench/method_reg/CropARNet/CropARNet_Hyperparameters.py
./gpbench/method_reg/CropARNet/__init__.py
./gpbench/method_reg/CropARNet/base_CropARNet.py
./gpbench/method_reg/Cropformer/Cropformer.py
./gpbench/method_reg/Cropformer/Cropformer_Hyperparameters.py
./gpbench/method_reg/Cropformer/__init__.py
./gpbench/method_reg/DL_GWAS/DL_GWAS.py
./gpbench/method_reg/DL_GWAS/DL_GWAS_Hyperparameters.py
./gpbench/method_reg/DL_GWAS/__init__.py
./gpbench/method_reg/DNNGP/DNNGP.py
./gpbench/method_reg/DNNGP/DNNGP_Hyperparameters.py
./gpbench/method_reg/DNNGP/__init__.py
./gpbench/method_reg/DNNGP/base_dnngp.py
./gpbench/method_reg/DeepCCR/DeepCCR.py
./gpbench/method_reg/DeepCCR/DeepCCR_Hyperparameters.py
./gpbench/method_reg/DeepCCR/__init__.py
./gpbench/method_reg/DeepCCR/base_DeepCCR.py
./gpbench/method_reg/DeepGS/DeepGS.py
./gpbench/method_reg/DeepGS/DeepGS_Hyperparameters.py
./gpbench/method_reg/DeepGS/__init__.py
./gpbench/method_reg/DeepGS/base_deepgs.py
./gpbench/method_reg/EIR/EIR.py
./gpbench/method_reg/EIR/EIR_Hyperparameters.py
./gpbench/method_reg/EIR/__init__.py
./gpbench/method_reg/EIR/utils/__init__.py
./gpbench/method_reg/EIR/utils/array_output_modules.py
./gpbench/method_reg/EIR/utils/common.py
./gpbench/method_reg/EIR/utils/lcl_layers.py
./gpbench/method_reg/EIR/utils/logging.py
./gpbench/method_reg/EIR/utils/mlp_layers.py
./gpbench/method_reg/EIR/utils/models_locally_connected.py
./gpbench/method_reg/EIR/utils/transformer_models.py
./gpbench/method_reg/ElasticNet/ElasticNet.py
./gpbench/method_reg/ElasticNet/ElasticNet_he.py
./gpbench/method_reg/ElasticNet/__init__.py
./gpbench/method_reg/G2PDeep/G2PDeep_Hyperparameters.py
./gpbench/method_reg/G2PDeep/G2Pdeep.py
./gpbench/method_reg/G2PDeep/__init__.py
./gpbench/method_reg/G2PDeep/base_G2PDeep.py
./gpbench/method_reg/GBLUP/GBLUP_R.py
./gpbench/method_reg/GBLUP/__init__.py
./gpbench/method_reg/GEFormer/GEFormer.py
./gpbench/method_reg/GEFormer/GEFormer_Hyperparameters.py
./gpbench/method_reg/GEFormer/__init__.py
./gpbench/method_reg/GEFormer/gMLP.py
./gpbench/method_reg/LightGBM/LightGBM.py
./gpbench/method_reg/LightGBM/LightGBM_Hyperparameters.py
./gpbench/method_reg/LightGBM/__init__.py
./gpbench/method_reg/MVP/MVP.py
./gpbench/method_reg/MVP/MVP_Hyperparameters.py
./gpbench/method_reg/MVP/__init__.py
./gpbench/method_reg/MVP/base_MVP.py
./gpbench/method_reg/RF/RF_GPU.py
./gpbench/method_reg/RF/RF_Hyperparameters.py
./gpbench/method_reg/RF/__init__.py
./gpbench/method_reg/SVC/SVC_GPU.py
./gpbench/method_reg/SVC/SVC_Hyperparameters.py
./gpbench/method_reg/SVC/__init__.py
./gpbench/method_reg/SoyDNGP/AlexNet_206.py
./gpbench/method_reg/SoyDNGP/SoyDNGP.py
./gpbench/method_reg/SoyDNGP/SoyDNGP_Hyperparameters.py
./gpbench/method_reg/SoyDNGP/__init__.py
./gpbench/method_reg/XGBoost/XGboost_GPU.py
./gpbench/method_reg/XGBoost/XGboost_Hyperparameters.py
./gpbench/method_reg/XGBoost/__init__.py
./gpbench/method_reg/rrBLUP/__init__.py
./gpbench/method_reg/rrBLUP/rrBLUP.py
./tests/test_import.py
./tests/test_method.py
gp_agent_tool/compute_dataset_feature.py
gp_agent_tool/config.py
gp_agent_tool/llm_client.py
gp_agent_tool/logging_utils.py
gp_agent_tool/main.py
gp_agent_tool/experience/create_masked_dataset_summary.py
gp_agent_tool/experience/dataset_summary_info.py
gp_agent_tool/experience/experience_info.py
gp_agent_tool/experience/get_matched_experience.py
gp_agent_tool/read_agent/__init__.py
gp_agent_tool/read_agent/nodes.py
gp_agent_tool/read_agent/prompts.py
gp_agent_tool/read_agent/python_repl_tool.py
gp_agent_tool/read_agent/state.py
gp_agent_tool/read_agent/workflow.py
gpbench/__init__.py
gpbench/_selftest.py
gpbench.egg-info/PKG-INFO
gpbench.egg-info/SOURCES.txt
gpbench.egg-info/dependency_links.txt
gpbench.egg-info/entry_points.txt
gpbench.egg-info/requires.txt
gpbench.egg-info/top_level.txt
gpbench/method_class/__init__.py
gpbench/method_class/BayesA/BayesA_class.py
gpbench/method_class/BayesA/__init__.py
gpbench/method_class/BayesA/_bayesfromR.py
gpbench/method_class/BayesA/_param_free_base_model.py
gpbench/method_class/BayesA/bayesAfromR.py
gpbench/method_class/BayesB/BayesB_class.py
gpbench/method_class/BayesB/__init__.py
gpbench/method_class/BayesB/_bayesfromR.py
gpbench/method_class/BayesB/_param_free_base_model.py
gpbench/method_class/BayesB/bayesBfromR.py
gpbench/method_class/BayesC/BayesC_class.py
gpbench/method_class/BayesC/__init__.py
gpbench/method_class/BayesC/_bayesfromR.py
gpbench/method_class/BayesC/_param_free_base_model.py
gpbench/method_class/BayesC/bayesCfromR.py
gpbench/method_class/CropARNet/CropARNet_class.py
gpbench/method_class/CropARNet/CropARNet_he_class.py
gpbench/method_class/CropARNet/__init__.py
gpbench/method_class/CropARNet/base_CropARNet_class.py
gpbench/method_class/Cropformer/Cropformer_class.py
gpbench/method_class/Cropformer/__init__.py
gpbench/method_class/Cropformer/cropformer_he_class.py
gpbench/method_class/DL_GWAS/DL_GWAS_class.py
gpbench/method_class/DL_GWAS/DL_GWAS_he_class.py
gpbench/method_class/DL_GWAS/__init__.py
gpbench/method_class/DNNGP/DNNGP_class.py
gpbench/method_class/DNNGP/DNNGP_he_class.py
gpbench/method_class/DNNGP/__init__.py
gpbench/method_class/DNNGP/base_dnngp_class.py
gpbench/method_class/DeepCCR/DeepCCR_class.py
gpbench/method_class/DeepCCR/DeepCCR_he_class.py
gpbench/method_class/DeepCCR/__init__.py
gpbench/method_class/DeepCCR/base_DeepCCR_class.py
gpbench/method_class/DeepGS/DeepGS_class.py
gpbench/method_class/DeepGS/DeepGS_he_class.py
gpbench/method_class/DeepGS/__init__.py
gpbench/method_class/DeepGS/base_deepgs_class.py
gpbench/method_class/EIR/EIR_class.py
gpbench/method_class/EIR/EIR_he_class.py
gpbench/method_class/EIR/__init__.py
gpbench/method_class/EIR/utils/__init__.py
gpbench/method_class/EIR/utils/array_output_modules.py
gpbench/method_class/EIR/utils/common.py
gpbench/method_class/EIR/utils/lcl_layers.py
gpbench/method_class/EIR/utils/logging.py
gpbench/method_class/EIR/utils/mlp_layers.py
gpbench/method_class/EIR/utils/models_locally_connected.py
gpbench/method_class/EIR/utils/transformer_models.py
gpbench/method_class/ElasticNet/ElasticNet_class.py
gpbench/method_class/ElasticNet/ElasticNet_he_class.py
gpbench/method_class/ElasticNet/__init__.py
gpbench/method_class/G2PDeep/G2PDeep_he_class.py
gpbench/method_class/G2PDeep/G2Pdeep_class.py
gpbench/method_class/G2PDeep/__init__.py
gpbench/method_class/G2PDeep/base_G2PDeep_class.py
gpbench/method_class/GBLUP/GBLUP_class.py
gpbench/method_class/GBLUP/__init__.py
gpbench/method_class/GEFormer/GEFormer_class.py
gpbench/method_class/GEFormer/GEFormer_he_class.py
gpbench/method_class/GEFormer/__init__.py
gpbench/method_class/GEFormer/gMLP_class.py
gpbench/method_class/LightGBM/LightGBM_class.py
gpbench/method_class/LightGBM/LightGBM_he_class.py
gpbench/method_class/LightGBM/__init__.py
gpbench/method_class/RF/RF_GPU_class.py
gpbench/method_class/RF/RF_GPU_he_class.py
gpbench/method_class/RF/__init__.py
gpbench/method_class/SVC/SVC_GPU.py
gpbench/method_class/SVC/SVC_GPU_he.py
gpbench/method_class/SVC/__init__.py
gpbench/method_class/SoyDNGP/AlexNet_206_class.py
gpbench/method_class/SoyDNGP/SoyDNGP_class.py
gpbench/method_class/SoyDNGP/SoyDNGP_he_class.py
gpbench/method_class/SoyDNGP/__init__.py
gpbench/method_class/XGBoost/XGboost_GPU_class.py
gpbench/method_class/XGBoost/XGboost_GPU_he_class.py
gpbench/method_class/XGBoost/__init__.py
gpbench/method_class/rrBLUP/__init__.py
gpbench/method_class/rrBLUP/rrBLUP_class.py
gpbench/method_reg/__init__.py
gpbench/method_reg/BayesA/BayesA.py
gpbench/method_reg/BayesA/__init__.py
gpbench/method_reg/BayesA/_bayesfromR.py
gpbench/method_reg/BayesA/_param_free_base_model.py
gpbench/method_reg/BayesA/bayesAfromR.py
gpbench/method_reg/BayesB/BayesB.py
gpbench/method_reg/BayesB/__init__.py
gpbench/method_reg/BayesB/_bayesfromR.py
gpbench/method_reg/BayesB/_param_free_base_model.py
gpbench/method_reg/BayesB/bayesBfromR.py
gpbench/method_reg/BayesC/BayesC.py
gpbench/method_reg/BayesC/__init__.py
gpbench/method_reg/BayesC/_bayesfromR.py
gpbench/method_reg/BayesC/_param_free_base_model.py
gpbench/method_reg/BayesC/bayesCfromR.py
gpbench/method_reg/CropARNet/CropARNet.py
gpbench/method_reg/CropARNet/CropARNet_Hyperparameters.py
gpbench/method_reg/CropARNet/__init__.py
gpbench/method_reg/CropARNet/base_CropARNet.py
gpbench/method_reg/Cropformer/Cropformer.py
gpbench/method_reg/Cropformer/Cropformer_Hyperparameters.py
gpbench/method_reg/Cropformer/__init__.py
gpbench/method_reg/DL_GWAS/DL_GWAS.py
gpbench/method_reg/DL_GWAS/DL_GWAS_Hyperparameters.py
gpbench/method_reg/DL_GWAS/__init__.py
gpbench/method_reg/DNNGP/DNNGP.py
gpbench/method_reg/DNNGP/DNNGP_Hyperparameters.py
gpbench/method_reg/DNNGP/__init__.py
gpbench/method_reg/DNNGP/base_dnngp.py
gpbench/method_reg/DeepCCR/DeepCCR.py
gpbench/method_reg/DeepCCR/DeepCCR_Hyperparameters.py
gpbench/method_reg/DeepCCR/__init__.py
gpbench/method_reg/DeepCCR/base_DeepCCR.py
gpbench/method_reg/DeepGS/DeepGS.py
gpbench/method_reg/DeepGS/DeepGS_Hyperparameters.py
gpbench/method_reg/DeepGS/__init__.py
gpbench/method_reg/DeepGS/base_deepgs.py
gpbench/method_reg/EIR/EIR.py
gpbench/method_reg/EIR/EIR_Hyperparameters.py
gpbench/method_reg/EIR/__init__.py
gpbench/method_reg/EIR/utils/__init__.py
gpbench/method_reg/EIR/utils/array_output_modules.py
gpbench/method_reg/EIR/utils/common.py
gpbench/method_reg/EIR/utils/lcl_layers.py
gpbench/method_reg/EIR/utils/logging.py
gpbench/method_reg/EIR/utils/mlp_layers.py
gpbench/method_reg/EIR/utils/models_locally_connected.py
gpbench/method_reg/EIR/utils/transformer_models.py
gpbench/method_reg/ElasticNet/ElasticNet.py
gpbench/method_reg/ElasticNet/ElasticNet_he.py
gpbench/method_reg/ElasticNet/__init__.py
gpbench/method_reg/G2PDeep/G2PDeep_Hyperparameters.py
gpbench/method_reg/G2PDeep/G2Pdeep.py
gpbench/method_reg/G2PDeep/__init__.py
gpbench/method_reg/G2PDeep/base_G2PDeep.py
gpbench/method_reg/GBLUP/GBLUP_R.py
gpbench/method_reg/GBLUP/__init__.py
gpbench/method_reg/GEFormer/GEFormer.py
gpbench/method_reg/GEFormer/GEFormer_Hyperparameters.py
gpbench/method_reg/GEFormer/__init__.py
gpbench/method_reg/GEFormer/gMLP.py
gpbench/method_reg/LightGBM/LightGBM.py
gpbench/method_reg/LightGBM/LightGBM_Hyperparameters.py
gpbench/method_reg/LightGBM/__init__.py
gpbench/method_reg/MVP/MVP.py
gpbench/method_reg/MVP/MVP_Hyperparameters.py
gpbench/method_reg/MVP/__init__.py
gpbench/method_reg/MVP/base_MVP.py
gpbench/method_reg/RF/RF_GPU.py
gpbench/method_reg/RF/RF_Hyperparameters.py
gpbench/method_reg/RF/__init__.py
gpbench/method_reg/SVC/SVC_GPU.py
gpbench/method_reg/SVC/SVC_Hyperparameters.py
gpbench/method_reg/SVC/__init__.py
gpbench/method_reg/SoyDNGP/AlexNet_206.py
gpbench/method_reg/SoyDNGP/SoyDNGP.py
gpbench/method_reg/SoyDNGP/SoyDNGP_Hyperparameters.py
gpbench/method_reg/SoyDNGP/__init__.py
gpbench/method_reg/XGBoost/XGboost_GPU.py
gpbench/method_reg/XGBoost/XGboost_Hyperparameters.py
gpbench/method_reg/XGBoost/__init__.py
gpbench/method_reg/rrBLUP/__init__.py
gpbench/method_reg/rrBLUP/rrBLUP.py
tests/test_import.py
tests/test_method.py