# Python
__pycache__/
*.py[cod]
*.egg-info/
.eggs/
build/
dist/
.venv/
venv/

# Tooling caches
.pytest_cache/
.mypy_cache/
.ruff_cache/
.coverage
htmlcov/

# Bioinformatics artifacts (large; never commit)
*.fasta
*.fa
*.fai
*.gzi
*.bam
*.bai
*.vcf
*.vcf.gz
*.vcf.bgz
*.tbi
*.csi
flanking_sequences.fasta

# OS / editor
.DS_Store
*.swp
.idea/
.vscode/

# Claude Code local (per-user) settings
.claude/settings.local.json
