# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
dist/
*.egg-info/
.eggs/
*.egg
MANIFEST

# Virtualenvs
.venv/
venv/
env/
.env
.envrc

# Testing / coverage
.pytest_cache/
.coverage
.coverage.*
htmlcov/
.tox/
.nox/
.mypy_cache/
.ruff_cache/
coverage.xml

# IDEs
.idea/
.vscode/
*.swp
*~

# OS
.DS_Store
Thumbs.db
desktop.ini

# Jupyter
.ipynb_checkpoints/

# vaultlab-specific
~/.config/vaultlab/
.vaultlab/
*.provenance.json.bak
embeddings/
.cache/

# Data (per .vaultlab-project.json data_sources, real data lives outside repo)
data/
*.h5ad
*.h5
*.tiff
*.tif
*.zarr/
*.imzML
*.ibd
*.fcs
*.svs

# Generated outputs
Output/
runs/

# Anthropic / API artifacts
*.cassette
.anthropic_cache/

# Build artifacts
*.pdf
!docs/**/*.pdf
*.pptx
!examples/**/expected_outputs/*.pptx
*.docx
!examples/**/expected_outputs/*.docx
