

.. _sphx_glr_auto_examples_visualizations:

.. visualization_example:

Visualization
-------------



.. raw:: html

    <div class="sphx-glr-thumbnails">

.. thumbnail-parent-div-open

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="A simple tree visualization with cocoatree.">

.. only:: html

  .. image:: /auto_examples/visualizations/images/thumb/sphx_glr_plot_simple_tree_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_visualizations_plot_simple_tree.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Simple tree visualization with metadata</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="A small example that shows how to plot the sector composition within a tree and to add metadata">

.. only:: html

  .. image:: /auto_examples/visualizations/images/thumb/sphx_glr_plot_tree_metadata_sector_seq_and_coevol_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_visualizations_plot_tree_metadata_sector_seq_and_coevol.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Plot sector together with (phylogenetic) tree and metadata</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The user can provide a dictionnary of colors for metadata.">

.. only:: html

  .. image:: /auto_examples/visualizations/images/thumb/sphx_glr_plot_tree_metadata_colors_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_visualizations_plot_tree_metadata_colors.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Specifying metadata's colors</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="A simple tree visualization with cocoatree.">

.. only:: html

  .. image:: /auto_examples/visualizations/images/thumb/sphx_glr_test_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_visualizations_test.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Simple tree visualization with metadata</div>
    </div>


.. thumbnail-parent-div-close

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/visualizations/plot_simple_tree
   /auto_examples/visualizations/plot_tree_metadata_sector_seq_and_coevol
   /auto_examples/visualizations/plot_tree_metadata_colors
   /auto_examples/visualizations/test

