Computation times

00:26.516 total execution time for 12 files from all galleries:

Example

Time

Mem (MB)

Mutual information versus SCA (../examples/advanced/plot_sca_vs_mi.py)

00:06.546

0.0

Plot sector together with (phylogenetic) tree and metadata (../examples/visualizations/plot_tree_metadata_sector_seq_and_coevol.py)

00:03.753

0.0

Perform full SCA analysis on the S1A serine protease dataset (../examples/advanced/plot_full_SCA_analysis.py)

00:03.695

0.0

DHFR proteases (../examples/datasets/plot_DHFR.py)

00:03.361

0.0

The simplest SCA analysis ever (../examples/plot_simple_sca.py)

00:01.895

0.0

Simple tree visualization with metadata (../examples/visualizations/plot_simple_tree.py)

00:01.757

0.0

S1A serine proteases (../examples/datasets/plot_s1A_serine_proteases.py)

00:01.729

0.0

Running Cocoatree with your own metric (../examples/advanced/plot_sca_with_own_metric.py)

00:01.247

0.0

Rhomboid proteases (../examples/datasets/plot_rhomboid_proteases.py)

00:01.245

0.0

Specifying metadata’s colors (../examples/visualizations/plot_tree_metadata_colors.py)

00:01.007

0.0

Mapping original MSA, filtered MSA, PDB, and sectors (../examples/plot_map_alignments.py)

00:00.280

0.0

Simple tree visualization with metadata (../examples/visualizations/test.py)

00:00.000

0.0