.claude/
.coverage
.DS_Store
.pytest_cache
.ruff_cache
.uv-cache
.venv
.vscode
.vscode/
*__pycache__/
*.egg-info/
*.log
*.zarr
*/_version.py
/data/
202*
build/
CLAUDE.md
explore.ipynb
local/
logs/
mkdocs.yml
multiomics_run/
profiling/
site/
sps*
test_output/

# Allow test data BAM files
!tests/data/
!tests/data/**
