LICENSE
README.md
pyproject.toml
src/phenopacket_toolkit/__init__.py
src/phenopacket_toolkit.egg-info/PKG-INFO
src/phenopacket_toolkit.egg-info/SOURCES.txt
src/phenopacket_toolkit.egg-info/dependency_links.txt
src/phenopacket_toolkit.egg-info/entry_points.txt
src/phenopacket_toolkit.egg-info/requires.txt
src/phenopacket_toolkit.egg-info/top_level.txt
src/phenopacket_toolkit/cli/__init__.py
src/phenopacket_toolkit/cli/main.py
src/phenopacket_toolkit/io/__init__.py
src/phenopacket_toolkit/io/detect.py
src/phenopacket_toolkit/io/readers.py
src/phenopacket_toolkit/io/writers.py
src/phenopacket_toolkit/io/dialects/__init__.py
src/phenopacket_toolkit/io/dialects/_common.py
src/phenopacket_toolkit/io/dialects/abusua.py
src/phenopacket_toolkit/io/dialects/ga4gh.py
src/phenopacket_toolkit/io/dialects/studio.py
src/phenopacket_toolkit/model/__init__.py
src/phenopacket_toolkit/model/builders.py
src/phenopacket_toolkit/model/curie.py
src/phenopacket_toolkit/model/document.py
src/phenopacket_toolkit/model/profile.py
src/phenopacket_toolkit/model/refs.py
src/phenopacket_toolkit/model/views.py
src/phenopacket_toolkit/ontology/__init__.py
src/phenopacket_toolkit/ontology/backends.py
src/phenopacket_toolkit/ontology/hierarchy.py
src/phenopacket_toolkit/ontology/policy.py
src/phenopacket_toolkit/ops/__init__.py
src/phenopacket_toolkit/ops/annotate.py
src/phenopacket_toolkit/ops/convert.py
src/phenopacket_toolkit/ops/deidentification.py
src/phenopacket_toolkit/ops/diffing.py
src/phenopacket_toolkit/ops/filter.py
src/phenopacket_toolkit/ops/normalisation.py
src/phenopacket_toolkit/ops/sort.py
src/phenopacket_toolkit/ops/splitmerge.py
src/phenopacket_toolkit/ops/statistics.py
src/phenopacket_toolkit/ops/validation.py
src/phenopacket_toolkit/ops/view.py
src/phenopacket_toolkit/report/__init__.py
src/phenopacket_toolkit/report/findings.py
src/phenopacket_toolkit/report/render.py
tests/test_add_and_hierarchy.py
tests/test_toolkit.py