.coveragerc
.flake8
.gitignore
.gitlab-ci.yml
.pydocstyle
LICENSE
README.md
pyproject.toml
requirements.txt
setup.py
version.py
doc/Makefile
doc/about.rst
doc/before_you_start.rst
doc/changelog.rst
doc/conf.py
doc/index.rst
doc/installation.rst
doc/license.rst
doc/make.bat
doc/overview.rst
doc/_static/logo.svg
doc/_static/logo_dark.svg
doc/api/core.rst
doc/api/index.rst
doc/api/individual.rst
doc/api/utils.rst
doc/api/processes/birth.rst
doc/api/processes/ec.rst
doc/api/processes/ec_screening.rst
doc/api/processes/index.rst
doc/api/processes/oc.rst
doc/api/processes/sex.rst
doc/api/processes/stratum.rst
doc/api/tools/batch.rst
doc/api/tools/calibration.rst
doc/api/tools/cea.rst
doc/api/tools/cohort.rst
doc/api/tools/index.rst
doc/data/index.rst
doc/data/birth/index.rst
doc/data/birth/nl.rst
doc/data/birth/nl_2021.rst
doc/data/birth/nl_2022.rst
doc/data/birth/us.rst
doc/data/cea/index.rst
doc/data/cea/population_norms.rst
doc/data/ec/index.rst
doc/data/ec/us.rst
doc/data/ec_screening/cea.rst
doc/data/ec_screening/example.rst
doc/data/ec_screening/index.rst
doc/data/oc/index.rst
doc/data/oc/nl_2017.rst
doc/data/oc/nl_2018.rst
doc/data/oc/nl_2019.rst
doc/data/oc/us_2009.rst
doc/data/oc/us_2017.rst
doc/data/oc/us_2018.rst
doc/data/oc/us_2019.rst
doc/data/sex/example.rst
doc/data/sex/index.rst
doc/development/contributing.rst
doc/development/cython.rst
doc/development/index.rst
doc/development/releasing.rst
doc/development/testing.rst
doc/tutorials/index.rst
doc/tutorials/basic/index.rst
doc/tutorials/basic/theory/index.rst
doc/tutorials/basic/theory/intervention_strategies.rst
doc/tutorials/basic/theory/limits_of_universes.rst
doc/tutorials/basic/theory/model_output.rst
doc/tutorials/basic/theory/multiprocessing.rst
doc/tutorials/basic/theory/recap.rst
doc/tutorials/basic/theory/reproducibility.rst
doc/tutorials/basic/theory/run_a_model.rst
doc/tutorials/basic/theory/intervention_strategies/1_add_screening.py
doc/tutorials/basic/theory/intervention_strategies/2_multiple_screening.py
doc/tutorials/basic/theory/limits_of_universes/1_error_with_extra_life_table_universe.py
doc/tutorials/basic/theory/model_output/1_model_output.py
doc/tutorials/basic/theory/multiprocessing/1_multiprocessing.py
doc/tutorials/basic/theory/reproducibility/1_single_seed.py
doc/tutorials/basic/theory/reproducibility/2_multiple_seeds.py
doc/tutorials/basic/theory/run_a_model/10_example_run.py
doc/tutorials/basic/theory/run_a_model/1_minimal.py
doc/tutorials/basic/theory/run_a_model/2_exporting.py
doc/tutorials/basic/theory/run_a_model/3_logging.py
doc/tutorials/basic/theory/run_a_model/4_multiple_processes.py
doc/tutorials/basic/theory/run_a_model/5_data.py
doc/tutorials/basic/theory/run_a_model/6_reproducibility.py
doc/tutorials/basic/theory/run_a_model/7_data_ec_from_data.py
doc/tutorials/basic/theory/run_a_model/8_data_ec.py
doc/tutorials/basic/theory/run_a_model/9_data_ec_from_data_change.py
doc/tutorials/basic/tools/birth_tables.rst
doc/tutorials/basic/tools/cea.rst
doc/tutorials/basic/tools/index.rst
doc/tutorials/basic/tools/life_tables.rst
doc/tutorials/basic/tools/run_a_population_model.rst
doc/tutorials/basic/tools/birth_tables/1_demonstrate_method.py
doc/tutorials/basic/tools/birth_tables/2_use_in_cohort_model.py
doc/tutorials/basic/tools/birth_tables/3_different_reference_years.py
doc/tutorials/basic/tools/birth_tables/4_use_population_data.py
doc/tutorials/basic/tools/cea/cea_example_run.py
doc/tutorials/basic/tools/cea/scatter_all.png
doc/tutorials/basic/tools/run_a_population_model/1_regular_model.py
doc/tutorials/basic/tools/run_a_population_model/2_population_model.py
doc/tutorials/basic/tools/run_a_population_model/3_create_cohort_function.py
doc/tutorials/basic/tools/run_a_population_model/4_add_screening.py
doc/tutorials/basic/tools/run_a_population_model/5_multiprocessing.py
doc/tutorials/builders/case.rst
doc/tutorials/builders/create_process.rst
doc/tutorials/builders/index.rst
doc/tutorials/builders/optimize_performance.rst
doc/tutorials/builders/utils.rst
doc/tutorials/builders/create_a_process/1_minimal.py
doc/tutorials/builders/create_a_process/2_parameters.py
doc/tutorials/builders/create_a_process/3_name.py
doc/tutorials/builders/create_a_process/4_properties.py
doc/tutorials/builders/create_a_process/5_events.py
doc/tutorials/builders/create_a_process/6_log_events.py
doc/tutorials/builders/create_a_process/7_termination.py
doc/tutorials/builders/create_a_process/8_memory.py
doc/tutorials/builders/create_a_process/9_log_durations.py
doc/tutorials/modellers/advanced_logging.rst
doc/tutorials/modellers/calibration.rst
doc/tutorials/modellers/index.rst
doc/tutorials/modellers/miscore_structure.rst
doc/tutorials/modellers/modify_a_process.rst
doc/tutorials/modellers/random_numbers.rst
doc/tutorials/modellers/take_snapshots.rst
doc/tutorials/modellers/using_stratum.rst
doc/tutorials/modellers/advanced_logging/1_disease_process.py
doc/tutorials/modellers/advanced_logging/2_log_events.py
doc/tutorials/modellers/advanced_logging/3_log_durations.py
doc/tutorials/modellers/advanced_logging/4_log_durations_start_stop.py
doc/tutorials/modellers/calibration/calibration.py
doc/tutorials/modellers/calibration/targets.py
doc/tutorials/modellers/miscore_structure/miscore_structure.svg
doc/tutorials/modellers/modify_a_process/modify_a_process.py
doc/tutorials/modellers/random_numbers/overwriting_properties.py
doc/tutorials/modellers/take_snapshots/1_model.py
doc/tutorials/modellers/take_snapshots/2_snapshots.py
doc/tutorials/modellers/take_snapshots/3_integer_snapshots.py
doc/tutorials/modellers/take_snapshots/4_snapshot_years.py
doc/tutorials/modellers/using_stratum/1_stratified_model.py
doc/tutorials/modellers/using_stratum/2_prevalent_cases.py
doc/tutorials/processes/ec.rst
doc/tutorials/processes/ec_screening.rst
doc/tutorials/processes/index.rst
doc/tutorials/processes/from_data/1_ec.py
doc/tutorials/processes/from_data/2_ec_from_data.py
examples/article.py
examples/runs/ec.py
examples/runs/ec_screening.py
examples/tools/cea.py
miscore/__init__.py
miscore/_version.py
miscore/core.py
miscore/individual.c
miscore/individual.py
miscore/utils.c
miscore/utils.py
miscore/processes/__init__.py
miscore/processes/birth/__init__.py
miscore/processes/birth/birth.py
miscore/processes/birth/data/__init__.py
miscore/processes/birth/data/nl.py
miscore/processes/birth/data/nl_2021.py
miscore/processes/birth/data/nl_2022.py
miscore/processes/birth/data/us.py
miscore/processes/ec/__init__.py
miscore/processes/ec/ec.py
miscore/processes/ec/data/__init__.py
miscore/processes/ec/data/us.py
miscore/processes/ec_screening/__init__.py
miscore/processes/ec_screening/ec_screening.py
miscore/processes/ec_screening/data/__init__.py
miscore/processes/ec_screening/data/cea.py
miscore/processes/ec_screening/data/example.py
miscore/processes/oc/__init__.py
miscore/processes/oc/oc.py
miscore/processes/oc/data/__init__.py
miscore/processes/oc/data/get_cohort_table.py
miscore/processes/oc/data/nl_2017.py
miscore/processes/oc/data/nl_2018.py
miscore/processes/oc/data/nl_2019.py
miscore/processes/oc/data/us_2009.py
miscore/processes/oc/data/us_2017.py
miscore/processes/oc/data/us_2018.py
miscore/processes/oc/data/us_2019.py
miscore/processes/oc/data/cohort/NL_1x10_rates.pkl
miscore/processes/oc/data/cohort/NL_1x1_rates.pkl
miscore/processes/oc/data/cohort/NL_1x5_rates.pkl
miscore/processes/oc/data/cohort/NLc_1x10_rates.pkl
miscore/processes/oc/data/cohort/NLc_1x1_rates.pkl
miscore/processes/oc/data/cohort/NLc_1x5_rates.pkl
miscore/processes/oc/data/cohort/US_1x10_rates.pkl
miscore/processes/oc/data/cohort/US_1x1_rates.pkl
miscore/processes/oc/data/cohort/US_1x5_rates.pkl
miscore/processes/oc/data/cohort/USc_1x10_rates.pkl
miscore/processes/oc/data/cohort/USc_1x1_rates.pkl
miscore/processes/oc/data/cohort/USc_1x5_rates.pkl
miscore/processes/sex/__init__.py
miscore/processes/sex/sex.py
miscore/processes/sex/data/__init__.py
miscore/processes/sex/data/example.py
miscore/processes/stratum/__init__.py
miscore/processes/stratum/stratum.py
miscore/tools/__init__.py
miscore/tools/batch.py
miscore/tools/calibration.py
miscore/tools/cohort.py
miscore/tools/cea/__init__.py
miscore/tools/cea/cea.py
miscore/tools/cea/data/__init__.py
miscore/tools/cea/data/population_norms.csv
miscore/tools/cea/data/population_norms.py
miscore_sim.egg-info/PKG-INFO
miscore_sim.egg-info/SOURCES.txt
miscore_sim.egg-info/dependency_links.txt
miscore_sim.egg-info/requires.txt
miscore_sim.egg-info/top_level.txt
tests/__init__.py
tests/integration/__init__.py
tests/integration/test_models.py
tests/integration/test_processes.py
tests/integration/tools/__init__.py
tests/integration/tools/test_calibration.py
tests/integration/tools/test_cea.py
tests/integration/tools/test_cohort.py
tests/unit/__init__.py
tests/unit/test_core.py
tests/unit/test_utils.py
tests/unit/tools/__init__.py
tests/unit/tools/test_cohort.py