CHANGELOG.md
CITATION.cff
LICENSE
MANIFEST.in
README.md
generate_model_map.py
pyproject.toml
qbic_predict.py
scripts/compare_outputs.py
src/qbic_selex/__init__.py
src/qbic_selex/__main__.py
src/qbic_selex/cli.py
src/qbic_selex/download.py
src/qbic_selex/kmers.py
src/qbic_selex/models.py
src/qbic_selex/output.py
src/qbic_selex/predict.py
src/qbic_selex/sequences.py
src/qbic_selex/stats.py
src/qbic_selex.egg-info/PKG-INFO
src/qbic_selex.egg-info/SOURCES.txt
src/qbic_selex.egg-info/dependency_links.txt
src/qbic_selex.egg-info/entry_points.txt
src/qbic_selex.egg-info/requires.txt
src/qbic_selex.egg-info/top_level.txt
src/qbic_selex/examples/example_covs_list.txt
src/qbic_selex/examples/example_input_sequences.csv
src/qbic_selex/examples/example_input_variants.csv
src/qbic_selex/examples/example_models_list.txt
src/qbic_selex/examples/example_models/ETV4_eDBD_TTTGCC40NTGA_KS_yin2017_0_4_7mer.weights.qbic
src/qbic_selex/examples/example_models/GABPA_FL_TC40NGCGATT_YWL_jolma2025_0_2_7mer.weights.qbic
tests/__init__.py
tests/conftest.py
tests/test_cli.py
tests/test_download.py
tests/test_golden.py
tests/test_gpu.py
tests/test_kmers_models.py
tests/test_predict_stats.py
tests/test_sequences.py
tests/data/golden/A_seq_nostats.csv
tests/data/golden/B_seq_stats.csv
tests/data/golden/C_seq_wildcard_stats.csv
tests/data/golden/D_var_stats.csv
tests/data/golden/F_var_short_pval.csv
tests/data/golden/H_single_stats.csv
tests/data/golden/README.md
tests/data/golden/example_model_map.csv