Metadata-Version: 2.4
Name: sfsutils-popgen
Version: 0.1.0b2
Summary: SFS parsing with site filtration and annotation, from VCF, Zarr, or tree sequences
License: GPL-3.0-or-later
License-File: LICENSE
Author: Sendrowski
Author-email: sendrowski.janek@gmail.com
Requires-Python: >=3.10,<3.14
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Provides-Extra: arg
Provides-Extra: vcf
Provides-Extra: zarr
Requires-Dist: biopython (>=1.84,<2.0)
Requires-Dist: cyvcf2 (>=0.31.0,<0.32.0) ; extra == "vcf"
Requires-Dist: jsonpickle (>=3.0.0,<4.0.0)
Requires-Dist: matplotlib (>=3.9,<4.0)
Requires-Dist: multiprocess (>=0.70.12,<0.71.0)
Requires-Dist: numpy (>=1.24,<3)
Requires-Dist: pandas (>=2.2.2,<3.0.0)
Requires-Dist: requests (>=2.28)
Requires-Dist: scipy (>=1.13,<2.0)
Requires-Dist: seaborn (>=0.13.2,<0.14.0)
Requires-Dist: tqdm (>=4.60.0,<5.0.0)
Requires-Dist: tskit (>=0.5) ; extra == "arg"
Requires-Dist: zarr (>=2.17,<3) ; extra == "zarr"
Description-Content-Type: text/markdown

# SFSUtils  <img align="right" width="100" src="docs/logo.png">
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``sfsutils`` is a package for parsing site frequency spectra (SFS), with support for versatile stratification, ancestral allele and site-degeneracy annotation, and filtering. Beyond the one-dimensional spectrum it also derives the joint SFS across several populations and the two-site SFS of linked pairs of sites, and reads from VCF files, VCF-Zarr stores, and tskit tree sequences (ARGs).

Please see the [documentation](https://sfsutils.readthedocs.io/en/latest/) for all the details.

