Metadata-Version: 2.4
Name: pystatsgenomic
Version: 0.1.0
Summary: Genomics and computational-biology statistical computing for Python
Project-URL: Homepage, https://sgcx.org/technology/pystatsgenomic/
Project-URL: Documentation, https://sgcx.org/docs/pystatsgenomic/
Project-URL: Repository, https://github.com/sgcx-org/pystatsgenomic
Project-URL: Issues, https://github.com/sgcx-org/pystatsgenomic/issues
Author-email: Hai-Shuo <contact@sgcx.org>
License-Expression: MIT
License-File: LICENSE
Keywords: bioinformatics,computational-biology,genomics,hardy-weinberg,statistics
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Typing :: Typed
Requires-Python: >=3.11
Requires-Dist: numpy>=1.24
Requires-Dist: pystatistics>=3.0.1
Requires-Dist: scipy>=1.10
Provides-Extra: dev
Requires-Dist: mypy>=1.0; extra == 'dev'
Requires-Dist: pytest-cov>=4.0; extra == 'dev'
Requires-Dist: pytest>=7.0; extra == 'dev'
Requires-Dist: ruff>=0.1; extra == 'dev'
Description-Content-Type: text/markdown

# PyStatsGenomic

**Genomics and computational-biology statistical computing for Python.**

> **Status: early / reserved (`0.0.1`).** This package reserves the
> `pystatsgenomic` name within the **PyStatistics open-core ecosystem** and will
> grow into a full genomics statistics library. The public API is forthcoming.

PyStatsGenomic is part of the open-core PyStatistics family:

| Package | Layer |
|---|---|
| [`pystatistics`](https://github.com/sgcx-org/pystatistics) | Fundamental, general statistics |
| [`pystatsbio`](https://github.com/sgcx-org/pystatsbio) | Biotech / pharma statistics |
| **`pystatsgenomic`** | Genomics / computational-biology statistics |

Like its siblings, it builds on `pystatistics` for the general statistical layer
and adds methods specific to genomics.

## Planned scope (candidates, not commitments)

- Hardy–Weinberg equilibrium test for a SNP, with allele/genotype frequencies.
- Genomics-aware helpers for high-dimensional differential-abundance summaries.

## Installation

```bash
pip install pystatsgenomic
```

## License

MIT © Hai-Shuo. Part of the [SGCX](https://sgcx.org) open-core ecosystem.
