models/category_connector_svm.pkl
models/category_DNA_RNA_svm.pkl
models/category_head_svm.pkl
models/category_integration_svm.pkl
models/category_lysis_svm.pkl
models/category_moron_svm.pkl
models/category_tail_svm.pkl
models/category_tr_svm.pkl
models/pvp_100000_svm.pkl
models/pvp_10000_svm.pkl
models/pvp_20000_svm.pkl
models/pvp_40000_svm.pkl
models/pvp_60000_svm.pkl
flamholz/
microviridae/
notebooks/.ipynb_checkpoints/
notebooks/2_dataset_splitting.ipynb
notebooks/3_train_clf.ipynb
notebooks/categories.faa
notebooks/categories.txt
notebooks/tutorial-Receptor_Binding_Proteins.ipynb
predict-categories.py
predict_test.py
sbatch/
tmp/
analyses/
data/DNA-associated.pkl
data/DNA-associated_multiAnnotationPcs.pkl
data/DNA_polymerase.pkl
data/DNA_polymerase_multiAnnotationPcs.pkl
data/RNA-associated.pkl
data/RNA-associated_multiAnnotationPcs.pkl
data/adsorption-related.pkl
data/adsorption-related_multiAnnotationPcs.pkl
data/annealing.pkl
data/annealing_multiAnnotationPcs.pkl
data/anti-restriction.pkl
data/anti-restriction_multiAnnotationPcs.pkl
data/baseplate.pkl
data/baseplate_multiAnnotationPcs.pkl
data/capsid.pkl
data/capsid_multiAnnotationPcs.pkl
data/category_DNA_RNA.pkl
data/category_DNA_RNA_multiAnnotationPcs.pkl
data/category_connector.pkl
data/category_connector_multiAnnotationPcs.pkl
data/category_head.pkl
data/category_head_multiAnnotationPcs.pkl
data/category_integration.pkl
data/category_integration_multiAnnotationPcs.pkl
data/category_lysis.pkl
data/category_lysis_multiAnnotationPcs.pkl
data/category_moron.pkl
data/category_moron_multiAnnotationPcs.pkl
data/category_tail.pkl
data/category_tail_multiAnnotationPcs.pkl
data/category_tr.pkl
data/category_tr_multiAnnotationPcs.pkl
data/cell_wall_degradation.pkl
data/cell_wall_degradation_multiAnnotationPcs.pkl
data/collar.pkl
data/collar_multiAnnotationPcs.pkl
data/crispr.pkl
data/crispr_multiAnnotationPcs.pkl
data/ejection.pkl
data/ejection_multiAnnotationPcs.pkl
data/head-tail_joining.pkl
data/head-tail_joining_multiAnnotationPcs.pkl
data/helicase.pkl
data/helicase_multiAnnotationPcs.pkl
data/holin.pkl
data/holin_multiAnnotationPcs.pkl
data/integration.pkl
data/integration_multiAnnotationPcs.pkl
data/lysin.pkl
data/lysin_multiAnnotationPcs.pkl
data/lysis.pkl
data/lysis_inhibitor.pkl
data/lysis_inhibitor_multiAnnotationPcs.pkl
data/lysis_multiAnnotationPcs.pkl
data/major_capsid.pkl
data/major_capsid_multiAnnotationPcs.pkl
data/major_tail.pkl
data/major_tail_multiAnnotationPcs.pkl
data/minor_capsid.pkl
data/minor_capsid_multiAnnotationPcs.pkl
data/minor_tail.pkl
data/minor_tail_multiAnnotationPcs.pkl
data/nuclease.pkl
data/nuclease_multiAnnotationPcs.pkl
data/nucleotide_metabolism.pkl
data/nucleotide_metabolism_multiAnnotationPcs.pkl
data/packaging_assembly.pkl
data/packaging_assembly_multiAnnotationPcs.pkl
data/phosphorylation.pkl
data/phosphorylation_multiAnnotationPcs.pkl
data/portal.pkl
data/portal_multiAnnotationPcs.pkl
data/primase.pkl
data/primase_multiAnnotationPcs.pkl
data/proteins_wKnown_functions.pkl
data/proteins_wUnknown_functions.pkl
data/pvp.pkl
data/pvp_10000.pkl
data/pvp_100000.pkl
data/pvp_20000.pkl
data/pvp_40000.pkl
data/pvp_60000.pkl
data/pvp_multiAnnotationPcs.pkl
data/reductase.pkl
data/reductase_multiAnnotationPcs.pkl
data/replication_initiation.pkl
data/replication_initiation_multiAnnotationPcs.pkl
data/sir2.pkl
data/sir2_multiAnnotationPcs.pkl
data/spanin.pkl
data/spanin_multiAnnotationPcs.pkl
data/super_infection.pkl
data/super_infection_multiAnnotationPcs.pkl
data/tail.pkl
data/tail_appendage.pkl
data/tail_appendage_multiAnnotationPcs.pkl
data/tail_multiAnnotationPcs.pkl
data/tail_sheath.pkl
data/tail_sheath_multiAnnotationPcs.pkl
data/terminase.pkl
data/terminase_multiAnnotationPcs.pkl
data/toxin.pkl
data/toxin_multiAnnotationPcs.pkl
data/transcriptional_activator.pkl
data/transcriptional_activator_multiAnnotationPcs.pkl
data/transcriptional_regulator.pkl
data/transcriptional_regulator_multiAnnotationPcs.pkl
data/transcriptional_repressor.pkl
data/transcriptional_repressor_multiAnnotationPcs.pkl
data/transferase.pkl
data/transferase_multiAnnotationPcs.pkl
data/cell_wall_depolymerase.pkl
data/cell_wall_depolymerase_multiAnnotationPcs.pkl
data/endolysin.pkl
data/endolysin_multiAnnotationPcs.pkl
notebooks/sbatch_count_pcs.sh
results/
