LICENSE
MANIFEST.in
README.md
pyproject.toml
examples/hbb_variant_aware.hx
examples/hdr_silent_pamblock.hx
examples/istop_base_edit.hx
examples/tp53_base_edit.hx
examples/tp53_cgbe.hx
examples/tp53_crispra.hx
examples/tp53_crispri.hx
examples/tp53_deletion.hx
examples/tp53_knock_in.hx
examples/tp53_ko.hx
examples/tp53_ko.yaml
examples/tp53_ko_ensembl.hx
examples/tp53_ko_spry.hx
examples/tp53_ko_strict.hx
examples/tp53_prime_edit.hx
helix/__init__.py
helix/bio.py
helix/cli.py
helix/codons.py
helix/adapters/__init__.py
helix/adapters/base.py
helix/adapters/base_edit_model.py
helix/adapters/builtins.py
helix/adapters/ensembl.py
helix/adapters/ncbi.py
helix/adapters/offtarget.py
helix/adapters/ontarget.py
helix/adapters/prime_edit_model.py
helix/adapters/registry.py
helix/adapters/repair.py
helix/adapters/variants.py
helix/adapters/data/__init__.py
helix/adapters/data/cfd2016.py
helix/adapters/data/doench2014.py
helix/agents/__init__.py
helix/agents/authoring.py
helix/agents/critic.py
helix/agents/demo.py
helix/agents/knowledge.py
helix/agents/llm.py
helix/agents/refine.py
helix/agents/strategy.py
helix/analysis/__init__.py
helix/analysis/amplicon.py
helix/analysis/crispresso.py
helix/analysis/models.py
helix/analysis/reconcile.py
helix/compiler/__init__.py
helix/compiler/base_editor.py
helix/compiler/batch.py
helix/compiler/consequence.py
helix/compiler/constraints.py
helix/compiler/deletion_designer.py
helix/compiler/delivery.py
helix/compiler/guide_designer.py
helix/compiler/hdr_designer.py
helix/compiler/pipeline.py
helix/compiler/prime_editor.py
helix/compiler/primers.py
helix/compiler/provenance.py
helix/compiler/regulation_designer.py
helix/compiler/target_resolver.py
helix/compiler/variants.py
helix/databases/__init__.py
helix/databases/base.py
helix/databases/cache.py
helix/databases/ensembl.py
helix/databases/models.py
helix/databases/ncbi.py
helix/databases/resolver.py
helix/frontend/__init__.py
helix/frontend/errors.py
helix/frontend/loader.py
helix/frontend/helix_lang/GRAMMAR.md
helix/frontend/helix_lang/__init__.py
helix/frontend/helix_lang/errors.py
helix/frontend/helix_lang/lexer.py
helix/frontend/helix_lang/parser.py
helix/frontend/helix_lang/transform.py
helix/ir/__init__.py
helix/ir/design.py
helix/ir/enums.py
helix/ir/spec.py
helix/mcp/__init__.py
helix/mcp/__main__.py
helix/mcp/server.py
helix/report/__init__.py
helix/report/bundle.py
helix/report/oligos.py
helix/safety/__init__.py
helix/safety/screen.py
helix/server/__init__.py
helix/server/app.py
helix/server/store.py
helix/structure/__init__.py
helix/structure/assess.py
helix/structure/backend.py
helix/structure/complex.py
helix/structure/esmfold.py
helix/structure/models.py
helix/structure/data/__init__.py
helix/structure/data/spcas9.py
helix_dsl.egg-info/PKG-INFO
helix_dsl.egg-info/SOURCES.txt
helix_dsl.egg-info/dependency_links.txt
helix_dsl.egg-info/entry_points.txt
helix_dsl.egg-info/requires.txt
helix_dsl.egg-info/top_level.txt
tests/test_agents.py
tests/test_analysis.py
tests/test_batch.py
tests/test_bio.py
tests/test_biology.py
tests/test_consequence.py
tests/test_critic.py
tests/test_databases.py
tests/test_deletion.py
tests/test_delivery.py
tests/test_delivery_aware.py
tests/test_ensembl.py
tests/test_export_analysis.py
tests/test_guide_quality.py
tests/test_hdr.py
tests/test_helix_lang.py
tests/test_mcp.py
tests/test_ncbi.py
tests/test_offtarget.py
tests/test_ontarget.py
tests/test_outcome_models.py
tests/test_pipeline.py
tests/test_prime_edit.py
tests/test_rag.py
tests/test_refine.py
tests/test_regulation.py
tests/test_repair.py
tests/test_server.py
tests/test_store.py
tests/test_structure.py
tests/test_variants.py