# notebooks in root folder for testing
test_*.ipynb

# repo-specific directories
data/
ignore/
output/
cache/
grassp/datasets/external/mmc*
grassp/datasets/external/elife*
grassp/datasets/external/uniprot_sp_accessions.tsv
grassp/datasets/marker_curation/*.tsv
grassp/datasets/marker_curation/*.md
!grassp/datasets/marker_curation/README.md
grassp/datasets/marker_curation/*.csv
grassp/datasets/marker_curation/*.xlsx
grassp/_version.py
CLAUDE.md

tests/output/
client/.npm/
client/node_modules/
client/dist/

# IDE directories/configs
.idea/
.vscode/
*.code-workspace
.DS_Store
.obsidian

# node-related
*.tgz
npm-debug.log*
yarn-debug.log*
yarn-error.log*
/.changelog

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
