pandas
numpy
pyfastx>=0.8.4
scikit-learn>=1.0.0
matplotlib>=3.5.0
seaborn>=0.11.0
biopython>=1.79
click>=8.0.0
requests
PyYAML>=6.0
openpyxl>=3.0
scipy>=1.7.0
psutil>=5.8.0
tqdm>=4.60.0

[dev]
pytest>=6.0
pytest-cov
black
isort
flake8

[docs]
mkdocs
mkdocs-material
mkdocs-mermaid2-plugin

[full]
pysam>=0.22
cyvcf2>=0.30
h5py>=3.6
Pillow>=9.0
statsmodels>=0.13
xlrd>=2.0
zstandard>=0.19

[test]
pytest>=7.0
pytest-cov
PyYAML>=6.0
openpyxl>=3.0

[test:python_version < "3.11"]
tomli>=1.1
