LICENSE
MANIFEST.in
README.md
pyproject.toml
docs/guide/checks.md
docs/guide/ci.md
docs/guide/how-it-works.md
docs/guide/leakage.md
docs/guide/per-position.md
docs/guide/python-api.md
src/genomic_benchmarks_qc/__init__.py
src/genomic_benchmarks_qc/cli.py
src/genomic_benchmarks_qc/evaluate_classes.py
src/genomic_benchmarks_qc/evaluate_splits.py
src/genomic_benchmarks_qc.egg-info/PKG-INFO
src/genomic_benchmarks_qc.egg-info/SOURCES.txt
src/genomic_benchmarks_qc.egg-info/dependency_links.txt
src/genomic_benchmarks_qc.egg-info/entry_points.txt
src/genomic_benchmarks_qc.egg-info/requires.txt
src/genomic_benchmarks_qc.egg-info/top_level.txt
src/genomic_benchmarks_qc/report/__init__.py
src/genomic_benchmarks_qc/report/alignment_rendering.py
src/genomic_benchmarks_qc/report/classes_html_report.py
src/genomic_benchmarks_qc/report/classes_plots.py
src/genomic_benchmarks_qc/report/colors.py
src/genomic_benchmarks_qc/report/per_position_payload.py
src/genomic_benchmarks_qc/report/report_generator.py
src/genomic_benchmarks_qc/report/split_html_report.py
src/genomic_benchmarks_qc/report/splits_plots.py
src/genomic_benchmarks_qc/report/utils.py
src/genomic_benchmarks_qc/report/assets/__init__.py
src/genomic_benchmarks_qc/report/assets/classes_report.html
src/genomic_benchmarks_qc/report/assets/per_position_viewer.css
src/genomic_benchmarks_qc/report/assets/per_position_viewer.js
src/genomic_benchmarks_qc/report/assets/report.css
src/genomic_benchmarks_qc/report/assets/report_design.css
src/genomic_benchmarks_qc/report/assets/report_ui.js
src/genomic_benchmarks_qc/report/assets/split_report.css
src/genomic_benchmarks_qc/report/assets/split_report.js
src/genomic_benchmarks_qc/report/assets/split_report_page.html
src/genomic_benchmarks_qc/report/assets/split_results_table.html
src/genomic_benchmarks_qc/utils/__init__.py
src/genomic_benchmarks_qc/utils/input_utils.py
src/genomic_benchmarks_qc/utils/mmseqs_runtime.py
src/genomic_benchmarks_qc/utils/mmseqs_summary.py
src/genomic_benchmarks_qc/utils/naming.py
src/genomic_benchmarks_qc/utils/seq_stats.py
src/genomic_benchmarks_qc/utils/split_stats.py
src/genomic_benchmarks_qc/utils/testing.py
tests/conftest.py
tests/helpers.py
tests/test_classes_pipeline.py
tests/test_cli_evaluate_classes.py
tests/test_cli_evaluate_splits.py
tests/test_cli_helpers.py
tests/test_docstring_references.py
tests/test_input_columns.py
tests/test_logging_setup.py
tests/test_metrics.py
tests/test_min_class_size.py
tests/test_mmseqs_runtime.py
tests/test_mmseqs_summary.py
tests/test_naming.py
tests/test_per_position.py
tests/test_per_position_payload.py
tests/test_plots.py
tests/test_readme_cli_tables.py
tests/test_readme_links.py
tests/test_report_assets.py
tests/test_report_html.py
tests/test_report_layout.py
tests/test_report_links.py
tests/test_report_weight.py
tests/test_sequence_statistics.py
tests/test_splits_pipeline.py
tests/test_startup.py
tests/test_version.py