README.md
pyproject.toml
biopytools.egg-info/PKG-INFO
biopytools.egg-info/SOURCES.txt
biopytools.egg-info/dependency_links.txt
biopytools.egg-info/entry_points.txt
biopytools.egg-info/requires.txt
biopytools.egg-info/top_level.txt
biopytools/admixture/__init__.py
biopytools/admixture/analysis.py
biopytools/admixture/config.py
biopytools/admixture/data_processing.py
biopytools/admixture/main.py
biopytools/admixture/results.py
biopytools/admixture/utils.py
biopytools/agp2table/__init__.py
biopytools/agp2table/config.py
biopytools/agp2table/main.py
biopytools/agp2table/utils.py
biopytools/annovar/__init__.py
biopytools/annovar/annotation.py
biopytools/annovar/config.py
biopytools/annovar/data_processing.py
biopytools/annovar/main.py
biopytools/annovar/results.py
biopytools/annovar/results_processor.py
biopytools/annovar/utils.py
biopytools/bam_cov/__init__.py
biopytools/bam_cov/config.py
biopytools/bam_cov/main.py
biopytools/bam_cov/utils.py
biopytools/bam_stats/__init__.py
biopytools/bam_stats/alignment_stats.py
biopytools/bam_stats/batch_processor.py
biopytools/bam_stats/config.py
biopytools/bam_stats/core.py
biopytools/bam_stats/coverage_stats.py
biopytools/bam_stats/duplicate_stats.py
biopytools/bam_stats/genome_stats.py
biopytools/bam_stats/insert_stats.py
biopytools/bam_stats/main.py
biopytools/bam_stats/sample_stats.py
biopytools/bam_stats/sequence_stats.py
biopytools/bam_stats/utils.py
biopytools/blast/__init__.py
biopytools/blast/alignment_visualizer.py
biopytools/blast/config.py
biopytools/blast/html_alignment.py
biopytools/blast/html_templates.py
biopytools/blast/main.py
biopytools/blast/statistics.py
biopytools/blast/text_alignment.py
biopytools/blast/utils.py
biopytools/busco/__init__.py
biopytools/busco/analyzer.py
biopytools/busco/config.py
biopytools/busco/main.py
biopytools/busco/results.py
biopytools/busco/utils.py
biopytools/bwa/__init__.py
biopytools/bwa/alignment.py
biopytools/bwa/config.py
biopytools/bwa/coverage.py
biopytools/bwa/genome.py
biopytools/bwa/main.py
biopytools/bwa/stats.py
biopytools/bwa/utils.py
biopytools/cli/main.py
biopytools/cli/commands/admixture.py
biopytools/cli/commands/agp2table.py
biopytools/cli/commands/annovar.py
biopytools/cli/commands/bam_cov.py
biopytools/cli/commands/bam_stats.py
biopytools/cli/commands/blast.py
biopytools/cli/commands/busco.py
biopytools/cli/commands/bwa.py
biopytools/cli/commands/deepbsa.py
biopytools/cli/commands/dual_rnaseq.py
biopytools/cli/commands/fastp.py
biopytools/cli/commands/genome_analysis.py
biopytools/cli/commands/hifi_hic.py
biopytools/cli/commands/iseq.py
biopytools/cli/commands/merge_deepbsa.py
biopytools/cli/commands/rnaseq.py
biopytools/cli/commands/smudgescope.py
biopytools/cli/commands/sra2fastq.py
biopytools/cli/commands/vcf2pca.py
biopytools/cli/commands/vcf2phylip.py
biopytools/deepbsa/__init__.py
biopytools/deepbsa/config.py
biopytools/deepbsa/main.py
biopytools/deepbsa/merge_results.py
biopytools/deepbsa/plot_data_calculator.py
biopytools/deepbsa/runner.py
biopytools/deepbsa/utils.py
biopytools/dual_rnaseq/__init__.py
biopytools/dual_rnaseq/bam_to_fastq.py
biopytools/dual_rnaseq/classification.py
biopytools/dual_rnaseq/config.py
biopytools/dual_rnaseq/data_processing.py
biopytools/dual_rnaseq/indexing.py
biopytools/dual_rnaseq/main.py
biopytools/dual_rnaseq/mapping_stats.py
biopytools/dual_rnaseq/quantification.py
biopytools/dual_rnaseq/results.py
biopytools/dual_rnaseq/utils.py
biopytools/fastp/__init__.py
biopytools/fastp/config.py
biopytools/fastp/data_processing.py
biopytools/fastp/main.py
biopytools/fastp/processing.py
biopytools/fastp/results.py
biopytools/fastp/utils.py
biopytools/genome_analysis/__init__.py
biopytools/genome_analysis/config.py
biopytools/genome_analysis/genomescope.py
biopytools/genome_analysis/main.py
biopytools/genome_analysis/utils.py
biopytools/hifi_hic/__init__.py
biopytools/hifi_hic/assembler.py
biopytools/hifi_hic/config.py
biopytools/hifi_hic/logger.py
biopytools/hifi_hic/main.py
biopytools/hifi_hic/ngs_polisher.py
biopytools/hifi_hic/purge_dups_wrapper.py
biopytools/hifi_hic/report.py
biopytools/hifi_hic/utils.py
biopytools/iseq/__init__.py
biopytools/iseq/calculator.py
biopytools/iseq/config.py
biopytools/iseq/main.py
biopytools/iseq/utils.py
biopytools/merge_deepbsa/__init__.py
biopytools/merge_deepbsa/config.py
biopytools/merge_deepbsa/main.py
biopytools/merge_deepbsa/utils.py
biopytools/rnaseq/__init__.py
biopytools/rnaseq/alignment.py
biopytools/rnaseq/config.py
biopytools/rnaseq/data_processing.py
biopytools/rnaseq/main.py
biopytools/rnaseq/quantification.py
biopytools/rnaseq/results.py
biopytools/rnaseq/utils.py
biopytools/smudgescope/__init__.py
biopytools/smudgescope/config.py
biopytools/smudgescope/main.py
biopytools/smudgescope/utils.py
biopytools/sra2fastq/__init__.py
biopytools/sra2fastq/config.py
biopytools/sra2fastq/main.py
biopytools/sra2fastq/processor.py
biopytools/sra2fastq/report.py
biopytools/sra2fastq/utils.py
biopytools/vcf2phylip/__init__.py
biopytools/vcf2phylip/config.py
biopytools/vcf2phylip/main.py
biopytools/vcf2phylip/matrix_writer.py
biopytools/vcf2phylip/processor.py
biopytools/vcf2phylip/utils.py
biopytools/vcf2phylip/vcf_parser.py
biopytools/vcf_pca/__init__.py
biopytools/vcf_pca/config.py
biopytools/vcf_pca/data_processing.py
biopytools/vcf_pca/main.py
biopytools/vcf_pca/pca_analysis.py
biopytools/vcf_pca/results.py
biopytools/vcf_pca/utils.py
biopytools/vcf_pca/visualization.py