LICENSE
README.md
pyproject.toml
src/vampire/__init__.py
src/vampire/_anno.py
src/vampire/_evaluate.py
src/vampire/_generator.py
src/vampire/_identity.py
src/vampire/_integrate.py
src/vampire/_scan.py
src/vampire/_utils.py
src/vampire/main.py
src/vampire/refine.py
src/vampire/_report_utils/__init__.py
src/vampire/_report_utils/_make_report.py
src/vampire/_report_utils/_make_stats.py
src/vampire/_report_utils/_motif_processing.py
src/vampire/_report_utils/_plot.py
src/vampire/_report_utils/_read.py
src/vampire/_report_utils/_stats_basic.py
src/vampire/_report_utils/_stats_cigar.py
src/vampire/_report_utils/_stats_seq.py
src/vampire/_report_utils/_table.py
src/vampire/anno/__init__.py
src/vampire/anno/pl/__init__.py
src/vampire/anno/pl/_heatmap.py
src/vampire/anno/pl/_logo.py
src/vampire/anno/pl/_motif_msa.py
src/vampire/anno/pl/_pca.py
src/vampire/anno/pl/_plot.py
src/vampire/anno/pl/_setting.py
src/vampire/anno/pl/_sizing.py
src/vampire/anno/pl/_violin.py
src/vampire/anno/pp/__init__.py
src/vampire/anno/pp/_markdup.py
src/vampire/anno/pp/_read.py
src/vampire/anno/tl/__init__.py
src/vampire/anno/tl/_align.py
src/vampire/anno/tl/_haplotype.py
src/vampire/anno/tl/_pca.py
src/vampire/datasets/__init__.py
src/vampire/datasets/_datasets.py
src/vampire/datasets/data/ancestry.csv
src/vampire/datasets/data/wdr7_hprc.h5ad
src/vampire/resources/__init__.py
src/vampire/resources/anno_web_summary_template.html
src/vampire/resources/refMotif.fa
src/vampire/resources/scan_web_summary_template.html
src/vampire/resources/__pycache__/__init__.cpython-312.pyc
src/vampire/scan/__init__.py
src/vampire/scan/pl/__init__.py
src/vampire/scan/pp/__init__.py
src/vampire/scan/tl/__init__.py
src/vampire_tr.egg-info/PKG-INFO
src/vampire_tr.egg-info/SOURCES.txt
src/vampire_tr.egg-info/dependency_links.txt
src/vampire_tr.egg-info/entry_points.txt
src/vampire_tr.egg-info/requires.txt
src/vampire_tr.egg-info/top_level.txt
tests/test_import.py