LICENSE
MANIFEST.in
README.md
setup.py
ptm_pose/__init__.py
ptm_pose/annotate.py
ptm_pose/database_interfacing.py
ptm_pose/flanking_sequences.py
ptm_pose/helpers.py
ptm_pose/nease_runner.py
ptm_pose/pose_config.py
ptm_pose/project.py
ptm_pose/stat_utils.py
ptm_pose.egg-info/PKG-INFO
ptm_pose.egg-info/SOURCES.txt
ptm_pose.egg-info/dependency_links.txt
ptm_pose.egg-info/requires.txt
ptm_pose.egg-info/top_level.txt
ptm_pose/Resource_Files/last_updated.txt
ptm_pose/Resource_Files/modification_conversion.csv
ptm_pose/Resource_Files/ptm_coordinates.csv.gz
ptm_pose/Resource_Files/translator.csv
ptm_pose/Resource_Files/Annotations/DEPOD/Enzyme.gmt.gz
ptm_pose/Resource_Files/Annotations/PTMsigDB/Pathway-BI.gmt.gz
ptm_pose/Resource_Files/Annotations/PTMsigDB/Pathway-NetPath.gmt.gz
ptm_pose/Resource_Files/Annotations/PTMsigDB/Pathway-WikiPathways.gmt.gz
ptm_pose/Resource_Files/Annotations/PTMsigDB/Perturbation-DIA.gmt.gz
ptm_pose/Resource_Files/Annotations/PTMsigDB/Perturbation-DIA2.gmt.gz
ptm_pose/Resource_Files/Annotations/PTMsigDB/Perturbation-PRM.gmt.gz
ptm_pose/Resource_Files/Annotations/PhosphoSitePlus/Disease.gmt.gz
ptm_pose/Resource_Files/Annotations/PhosphoSitePlus/Enzyme.gmt.gz
ptm_pose/Resource_Files/Annotations/PhosphoSitePlus/Function.gmt.gz
ptm_pose/Resource_Files/Annotations/PhosphoSitePlus/Interactions.gmt.gz
ptm_pose/Resource_Files/Annotations/PhosphoSitePlus/Perturbation.gmt.gz
ptm_pose/Resource_Files/Annotations/PhosphoSitePlus/Process.gmt.gz
ptm_pose/Resource_Files/Annotations/RegPhos/Enzyme.gmt.gz
ptm_pose/Resource_Files/Annotations/iKiP/Enzyme.gmt.gz
ptm_pose/Resource_Files/Example/altered_flanks.csv
ptm_pose/Resource_Files/Example/splice_data.csv
ptm_pose/Resource_Files/Example/spliced_ptms.csv
ptm_pose/analyze/__init__.py
ptm_pose/analyze/annotations.py
ptm_pose/analyze/enzyme.py
ptm_pose/analyze/filter.py
ptm_pose/analyze/flank_analysis.py
ptm_pose/analyze/function.py
ptm_pose/analyze/interactions.py
ptm_pose/analyze/summarize.py