LICENSE.md
MANIFEST.in
README.md
setup.py
raidionicsrads/__init__.py
raidionicsrads/__main__.py
raidionicsrads/compute.py
raidionicsrads.egg-info/PKG-INFO
raidionicsrads.egg-info/SOURCES.txt
raidionicsrads.egg-info/dependency_links.txt
raidionicsrads.egg-info/entry_points.txt
raidionicsrads.egg-info/requires.txt
raidionicsrads.egg-info/top_level.txt
raidionicsrads/Atlases/BrainGrid/Voxels/BG_regions_description.csv
raidionicsrads/Atlases/BrainGrid/Voxels/braingrid_voxels_atlas.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/braingrid_subcortical_structures_description.csv
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/braingrid_subcortical_structures_overall_mask.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Acoustic_radiation_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Acoustic_radiation_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Anterior_Thalamic_Radiation_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Anterior_Thalamic_Radiation_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Arcuate_Fasciculus_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Arcuate_Fasciculus_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Body_of_corpus_callosum.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Cingulum_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Cingulum_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Cortico-Spinal_Tract_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Cortico-Spinal_Tract_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/External_capsule_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/External_capsule_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Fornix_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Fornix_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Frontal_Aslant_Tract_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Frontal_Aslant_tract_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Genu_of_corpus_callosum.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Indirect_anterior_Superior_Longitudinal_Fasciculus_(orizontal_SLF2-3)_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Indirect_anterior_Superior_Longitudinal_Fasciculus_(orizontal_SLF2-3)_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Indirect_posterior_Superio_Longitudinal_Fasciculus_(vertical_SLF)_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Indirect_posterior_Superior_Longitudinal_Fasciculus_(vertical_SLF)_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Inferior_Fronto-Occipital_Fasciculus_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Inferior_Fronto-Occipital_Fasciculus_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Inferior_Longitudinal_Fasciculus_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Inferior_Longitudinal_Fasciculus_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Middle_Longitudinal_Fasciculus_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Middle_Longitudinal_Fasciculus_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Optic_Radiation_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Optic_Radiation_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Posterior_Commissure.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Splenium_of_corpus_callosum.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Uncinate_Fasciculus_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Uncinate_Fasciculus_right.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Vertical_Occipital_fasciculus_left.nii.gz
raidionicsrads/Atlases/BrainGrid/White_matter_atlas/StandAlone/Vertical_Occipital_fasciculus_right.nii.gz
raidionicsrads/Atlases/Harvard-Oxford/HarvardOxford-cort-maxprob-thr0-1mm_mni.nii.gz
raidionicsrads/Atlases/Harvard-Oxford/regions_description.csv
raidionicsrads/Atlases/Schaefer400/17regions_description.csv
raidionicsrads/Atlases/Schaefer400/400regions_description.csv
raidionicsrads/Atlases/Schaefer400/7regions_description.csv
raidionicsrads/Atlases/Schaefer400/schaefer17MNI_mni.nii.gz
raidionicsrads/Atlases/Schaefer400/schaefer400MNI_mni.nii.gz
raidionicsrads/Atlases/Schaefer400/schaefer7MNI_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/bcb_subcortical_structures_description.csv
raidionicsrads/Atlases/bcb_tracts/bcb_subcortical_structures_overall_mask.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Anterior_Commissure_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Anterior_Thalamic_Projections_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Anterior_Thalamic_Projections_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Arcuate_Anterior_Segment_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Arcuate_Anterior_Segment_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Arcuate_Long_Segment_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Arcuate_Long_Segment_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Arcuate_Posterior_Segment_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Arcuate_Posterior_Segment_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Cingulum_Left_anterior_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Cingulum_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Cingulum_Left_posterior_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Cingulum_Right_Anterior_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Cingulum_Right_Posterior_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Cingulum_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Corpus_callosum_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Cortico_Spinal_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Cortico_Spinal_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Face_U_tract_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Face_U_tract_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fornix_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Aslant_Tract_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Aslant_tract_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Commissural_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Inferior_longitudinal_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Inferior_longitudinal_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Orbito_Polar_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Orbito_Polar_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Superior_Longitudinal_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Frontal_Superior_Longitudinal_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract1_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract1_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract2_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract2_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract3_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract3_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract4_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract4_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract5_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Insular_tract5_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Marginal_tract_left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Marginal_tract_right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Striatal_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Fronto_Striatal_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Handinf_U_tract_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Handinf_U_tract_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Handmid_U_tract_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Handmid_U_tract_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Handsup_U_tract_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Handsup_U_tract_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Inferior_Fronto_Occipital_fasciculus_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Inferior_Fronto_Occipital_fasciculus_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Inferior_Longitudinal_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Inferior_Longitudinal_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Optic_Radiations_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Optic_Radiations_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Paracentral_U_tract_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Paracentral_U_tract_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Pons_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Pons_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Superior_Londgitudinal_Fasciculus_III_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Superior_Londgitudinal_Fasciculus_III_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Superior_Londgitudinal_Fasciculus_II_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Superior_Londgitudinal_Fasciculus_II_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Superior_Londgitudinal_Fasciculus_I_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Superior_Londgitudinal_Fasciculus_I_Right_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Uncinate_Left_mni.nii.gz
raidionicsrads/Atlases/bcb_tracts/StandAlone/Uncinate_Right_mni.nii.gz
raidionicsrads/Atlases/mni_icbm152_nlin_sym_09a/extended_lateralisation_mask.nii.gz
raidionicsrads/Atlases/mni_icbm152_nlin_sym_09a/lobe_labels_description.csv
raidionicsrads/Atlases/mni_icbm152_nlin_sym_09a/mni_icbm152_t1_tal_nlin_sym_09a.nii
raidionicsrads/Atlases/mni_icbm152_nlin_sym_09a/mni_icbm152_t1_tal_nlin_sym_09a_mask.nii
raidionicsrads/Atlases/mni_icbm152_nlin_sym_09a/mni_icbm152_t2_tal_nlin_sym_09a.nii
raidionicsrads/Atlases/mni_icbm152_nlin_sym_09a/reduced_lobes_brain.nii.gz
raidionicsrads/Atlases/resectability_maps/Resection_probability_map_left_mni.nii.gz
raidionicsrads/Atlases/resectability_maps/Resection_probability_map_right_mni.nii.gz
raidionicsrads/MediastinumDiagnosis/__init__.py
raidionicsrads/MediastinumDiagnosis/mediastinum_diagnostics.py
raidionicsrads/MediastinumDiagnosis/mediastinum_parameters.py
raidionicsrads/Pipelines/AbstractPipelineStep.py
raidionicsrads/Pipelines/ClassificationStep.py
raidionicsrads/Pipelines/FeaturesComputationStep.py
raidionicsrads/Pipelines/ModelSelectionStep.py
raidionicsrads/Pipelines/PipelineStructure.py
raidionicsrads/Pipelines/RegistrationDeployerStep.py
raidionicsrads/Pipelines/RegistrationStep.py
raidionicsrads/Pipelines/ReportingSelectionStep.py
raidionicsrads/Pipelines/SegmentationRefinementStep.py
raidionicsrads/Pipelines/SegmentationStep.py
raidionicsrads/Pipelines/SurgicalReportingStep.py
raidionicsrads/Pipelines/__init__.py
raidionicsrads/Processing/__init__.py
raidionicsrads/Processing/brain_processing.py
raidionicsrads/Processing/mediastinum_processing.py
raidionicsrads/Processing/neuro_report_computing.py
raidionicsrads/Processing/tumor_features_computation.py
raidionicsrads/Utils/__init__.py
raidionicsrads/Utils/ants_downloader.py
raidionicsrads/Utils/ants_registration.py
raidionicsrads/Utils/configuration_parser.py
raidionicsrads/Utils/io.py
raidionicsrads/Utils/segmentation_parser.py
raidionicsrads/Utils/utilities.py
raidionicsrads/Utils/volume_utilities.py
raidionicsrads/Utils/DataStructures/AnnotationStructure.py
raidionicsrads/Utils/DataStructures/PatientStructure.py
raidionicsrads/Utils/DataStructures/RadiologicalVolumeStructure.py
raidionicsrads/Utils/DataStructures/RegistrationStructure.py
raidionicsrads/Utils/DataStructures/__init__.py
raidionicsrads/Utils/ReportingStructures/MediastinumReportingStructure.py
raidionicsrads/Utils/ReportingStructures/NeuroReportingStructure.py
raidionicsrads/Utils/ReportingStructures/NeuroSurgicalReportingStructure.py
raidionicsrads/Utils/ReportingStructures/__init__.py
tests/__init__.py
tests/batch_iterative_process_example.py
tests/conftest.py
tests/download_resources.py