harmonization._glmnet

This module '_glmnet' is auto-generated with f2py (version:2.1.3). Functions: get_int_parms(sml,eps,big,mnlam,rsqmax,pmin,exmx) chg_fract_dev(arg) chg_dev_max(arg) chg_min_flmin(arg) chg_big(arg) chg_min_lambdas(irg) chg_min_null_prob(arg) chg_max_exp(arg) lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr = elnet(parm,x,y,w,jd,vp,cl,nx,flmin,ulam,thr,ka=1,ne=min(shape(x,1), nx),nlam=len(ulam),isd=1,intr=1,maxit=100000) elnetu(parm,x,y,w,jd,vp,cl,ne,flmin,ulam,thr,isd,intr,maxit,lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nx=shape(ca,0),nlam=len(ulam)) standard(x,y,w,isd,intr,ju,g,xm,xs,ym,ys,xv,jerr,no=shape(x,0),ni=shape(x,1)) elnet1(beta,ju,vp,cl,g,ne,x,flmin,ulam,thr,maxit,xv,lmu,ao,ia,kin,rsqo,almo,nlp,jerr,ni=len(ju),no=shape(x,0),nx=shape(ao,0),nlam=len(ulam)) elnetn(parm,x,y,w,jd,vp,cl,ne,flmin,ulam,thr,isd,intr,maxit,lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nx=shape(ca,0),nlam=len(ulam)) standard1(x,y,w,isd,intr,ju,xm,xs,ym,ys,xv,jerr,no=shape(x,0),ni=shape(x,1)) elnet2(beta,ju,vp,cl,y,ne,x,flmin,ulam,thr,maxit,xv,lmu,ao,ia,kin,rsqo,almo,nlp,jerr,ni=len(ju),no=len(y),nx=shape(ao,0),nlam=len(ulam)) chkvars(x,ju,no=shape(x,0),ni=shape(x,1)) uncomp(ca,ia,nin,a,ni=len(a)) modval(a0,ca,ia,x,f,nin=len(ca),n=shape(x,0)) lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr = spelnet(parm,no,ni,x,ix,jx,y,w,jd,vp,cl,nx,flmin,ulam,thr,ka=1,ne=min(ni, nx),nlam=len(ulam),isd=1,intr=1,maxit=100000) spelnetu(parm,x,ix,jx,y,w,jd,vp,cl,ne,flmin,ulam,thr,isd,intr,maxit,lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr,no=len(y),ni=len(vp),nx=shape(ca,0),nlam=len(ulam)) spstandard(x,ix,jx,y,w,ju,isd,intr,g,xm,xs,ym,ys,xv,jerr,no=len(y),ni=len(ju)) spelnet1(beta,g,w,ne,x,ix,jx,ju,vp,cl,flmin,ulam,thr,maxit,xm,xs,xv,lmu,ao,ia,kin,rsqo,almo,nlp,jerr,ni=len(g),no=len(w),nx=shape(ao,0),nlam=len(ulam)) spelnetn(parm,x,ix,jx,y,w,jd,vp,cl,ne,flmin,ulam,thr,isd,intr,maxit,lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr,no=len(y),ni=len(vp),nx=shape(ca,0),nlam=len(ulam)) spstandard1(x,ix,jx,y,w,ju,isd,intr,xm,xs,ym,ys,xv,jerr,no=len(y),ni=len(ju)) spelnet2(beta,y,w,ne,x,ix,jx,ju,vp,cl,flmin,ulam,thr,maxit,xm,xs,xv,lmu,ao,ia,kin,rsqo,almo,nlp,jerr,ni=len(ju),no=len(y),nx=shape(ao,0),nlam=len(ulam)) spchkvars(no,x,ix,ju,ni=len(ju)) cmodval(a0,ca,ia,nin,x,ix,jx,f,n=len(f)) row_prod = row_prod(i,j,ia,ja,ra,w) dot = dot(x,y,mx,my,nx,ny,w) lmu,a0,ca,ia,nin,dev0,dev,alm,nlp,jerr = lognet(parm,nc,x,y,g,jd,vp,cl,nx,flmin,ulam,thr,ne=min(shape(x,1), nx),nlam=len(ulam),isd=1,intr=1,maxit=100000,kopt=0) lstandard1(x,w,ju,isd,intr,xm,xs,no=shape(x,0),ni=shape(x,1)) multlstandard1(x,w,ju,isd,intr,xm,xs,xv,no=shape(x,0),ni=shape(x,1)) lognet2n(parm,x,y,g,w,ju,vp,cl,ne,flmin,ulam,shri,isd,intr,maxit,kopt,lmu,a0,a,m,kin,dev0,dev,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nx=shape(a,0),nlam=len(ulam)) dev2 = dev2(w,y,p,pmin,n=len(w)) azero = azero(y,g,q,jerr,n=len(y)) lognetn(parm,x,y,g,w,ju,vp,cl,ne,flmin,ulam,shri,isd,intr,maxit,kopt,lmu,a0,a,m,kin,dev0,dev,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nc=shape(y,1),nx=shape(a,0),nlam=len(ulam)) kazero(y,g,q,az,jerr,kk=shape(y,1),n=shape(y,0)) elc = elc(parm,cl,a,m,n=len(a)) nintot = nintot(a,m,nin,is,ni=len(is),nx=shape(a,0),nc=shape(a,1)) luncomp(ca,ia,nin,a,ni=shape(a,0),nx=shape(ca,0),nc=shape(ca,1)) lmodval(x,a0,ca,ia,nin,ans,nt=shape(x,0),nc=len(a0),nx=shape(ca,0)) lmu,a0,ca,ia,nin,dev0,dev,alm,nlp,jerr = splognet(parm,no,ni,nc,x,ix,jx,y,g,jd,vp,cl,nx,flmin,ulam,thr,ne=min(ni,nx),nlam=len(ulam),isd=1,intr=1,maxit=100000,kopt=0) multsplstandard2(x,ix,jx,w,ju,isd,intr,xm,xs,xv,no=len(w),ni=len(ju)) splstandard2(x,ix,jx,w,ju,isd,intr,xm,xs,no=len(w),ni=len(ju)) sprlognet2n(parm,x,ix,jx,y,g,w,ju,vp,cl,ne,flmin,ulam,shri,isd,intr,maxit,kopt,xb,xs,lmu,a0,a,m,kin,dev0,dev,alm,nlp,jerr,no=len(y),ni=len(ju),nx=shape(a,0),nlam=len(ulam)) sprlognetn(parm,x,ix,jx,y,g,w,ju,vp,cl,ne,flmin,ulam,shri,isd,intr,maxit,kopt,xb,xs,lmu,a0,a,m,kin,dev0,dev,alm,nlp,jerr,no=shape(y,0),ni=len(ju),nc=shape(y,1),nx=shape(a,0),nlam=len(ulam)) lcmodval(a0,ca,ia,nin,x,ix,jx,f,nc=len(a0),nx=shape(ca,0),n=shape(f,1)) coxnet(parm,x,y,d,g,w,jd,vp,cl,ne,flmin,ulam,thr,maxit,isd,lmu,ca,ia,nin,dev0,dev,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nx=shape(ca,0),nlam=len(ulam)) cstandard(x,w,ju,isd,xs,no=shape(x,0),ni=shape(x,1)) coxnet1(parm,x,y,d,g,q,ju,vp,cl,ne,flmin,ulam,cthri,isd,maxit,lmu,ao,m,kin,dev0,dev,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nx=shape(ao,0),nlam=len(ulam)) cxmodval(ca,ia,x,f,nin=len(ca),n=shape(x,0)) groups(y,d,q,nk,kp,jp,t0,jerr,no=len(y)) outer(d,dk,kp,jp,e,wr,w,jerr,u,no=len(d),nk=len(dk)) vars(x,w,ixx,v,no=shape(x,0),ni=shape(x,1)) died(d,kp,jp,dk,no=len(d),nk=len(kp)) usk(kp,jp,e,u,no=len(jp),nk=len(kp)) risk = risk(ni,d,dk,f,e,kp,jp,u,no=len(d),nk=len(dk)) loglike(x,y,d,g,w,a,flog,jerr,no=shape(x,0),ni=shape(x,1),nlam=shape(a,1)) fishnet(parm,x,y,g,w,jd,vp,cl,ne,flmin,ulam,thr,isd,intr,maxit,lmu,a0,ca,ia,nin,dev0,dev,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nx=shape(ca,0),nlam=len(ulam)) fishnet1(parm,x,y,g,q,ju,vp,cl,ne,flmin,ulam,shri,isd,intr,maxit,lmu,a0,ca,m,kin,dev0,dev,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nx=shape(ca,0),nlam=len(ulam)) nonzero = nonzero(v,n=len(v)) solns(a,ia,nin,b,ni=shape(b,0),nx=shape(a,0),lmu=shape(a,1)) lsolns(a,ia,nin,b,ni=shape(b,0),nx=shape(a,0),nc=shape(a,1),lmu=shape(a,2)) deviance(x,y,g,q,a0,a,flog,jerr,no=shape(x,0),ni=shape(x,1),nlam=len(a0)) spfishnet(parm,x,ix,jx,y,g,w,jd,vp,cl,ne,flmin,ulam,thr,isd,intr,maxit,lmu,a0,ca,ia,nin,dev0,dev,alm,nlp,jerr,no=len(y),ni=len(vp),nx=shape(ca,0),nlam=len(ulam)) spfishnet1(parm,x,ix,jx,y,g,q,ju,vp,cl,ne,flmin,ulam,shri,isd,intr,maxit,xb,xs,lmu,a0,ca,m,kin,dev0,dev,alm,nlp,jerr,no=len(y),ni=len(ju),nx=shape(ca,0),nlam=len(ulam)) spdeviance(x,ix,jx,y,g,q,a0,a,flog,jerr,no=len(y),ni=shape(a,0),nlam=len(a0)) cspdeviance(x,ix,jx,y,g,q,a0,ca,ia,nin,flog,jerr,no=len(y),nx=shape(ca,0),nlam=len(a0)) lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr = multelnet(parm,x,y,w,jd,vp,cl,nx,flmin,ulam,thr,no=shape(x,0),ni=shape(x,1),nr=shape(y,1),ne=min(shape(x,1), nx),nlam=len(ulam),isd=1,jsd=1,intr=1,maxit=100000) multelnetn(parm,x,y,w,jd,vp,cl,ne,flmin,ulam,thr,isd,jsd,intr,maxit,lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nr=shape(y,1),nx=shape(ca,0),nlam=len(ulam)) multstandard1(x,y,w,isd,jsd,intr,ju,xm,xs,ym,ys,xv,ys0,jerr,no=shape(x,0),ni=shape(x,1),nr=shape(y,1)) multelnet2(beta,ju,vp,cl,y,ne,x,flmin,ulam,thri,maxit,xv,ys0,lmu,ao,ia,kin,rsqo,almo,nlp,jerr,ni=len(ju),nr=shape(cl,1),no=shape(y,0),nx=shape(ao,0),nlam=len(ulam)) chkbnds(gk,gkn,xv,cl,al1,al2,a,isc,jerr,nr=len(gk)) chkbnds1(gk,gkn,xv,cl1,cl2,al1,al2,a,isc,jerr,nr=len(gk)) bnorm = bnorm(b0,al1p,al2p,g,usq,jerr) chg_bnorm(arg,irg) get_bnorm(arg,irg) multsolns(a,ia,nin,b,ni=shape(b,0),nx=shape(a,0),nr=shape(a,1),lmu=shape(a,2)) multuncomp(ca,ia,nin,a,ni=shape(a,0),nr=shape(ca,1),nx=shape(ca,0)) multmodval(a0,ca,ia,nin,x,f,nx=shape(ca,0),nr=len(a0),n=shape(x,0)) lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr = multspelnet(parm,x,ix,jx,y,w,jd,vp,cl,ne,flmin,ulam,thr,no=shape(x,0),ni=shape(x,1),nr=shape(y,1),nx=shape(ca,0),nlam=len(ulam),isd=1,jsd=1,intr=1,maxit=100000) multspelnetn(parm,x,ix,jx,y,w,jd,vp,cl,ne,flmin,ulam,thr,isd,jsd,intr,maxit,lmu,a0,ca,ia,nin,rsq,alm,nlp,jerr,no=shape(y,0),ni=len(vp),nr=shape(y,1),nx=shape(ca,0),nlam=len(ulam)) multspstandard1(x,ix,jx,y,w,ju,isd,jsd,intr,xm,xs,ym,ys,xv,ys0,jerr,no=shape(y,0),ni=len(ju),nr=shape(y,1)) multspelnet2(beta,y,w,ne,x,ix,jx,ju,vp,cl,flmin,ulam,thri,maxit,xm,xs,xv,ys0,lmu,ao,ia,kin,rsqo,almo,nlp,jerr,ni=len(ju),nr=shape(y,1),no=shape(y,0),nx=shape(ao,0),nlam=len(ulam)) multlognetn(parm,x,y,g,w,ju,vp,cl,ne,flmin,ulam,shri,intr,maxit,xv,lmu,a0,a,m,kin,dev0,dev,alm,nlp,jerr,no=shape(x,0),ni=shape(x,1),nc=shape(y,1),nx=shape(a,0),nlam=len(ulam)) multsprlognetn(parm,x,ix,jx,y,g,w,ju,vp,cl,ne,flmin,ulam,shri,intr,maxit,xv,xb,xs,lmu,a0,a,m,kin,dev0,dev,alm,nlp,jerr,no=shape(y,0),ni=len(ju),nc=shape(y,1),nx=shape(a,0),nlam=len(ulam)) psort7(v,a,ii,jj=len(v)) .