Phybers
Functions
phybers.clustering.clustering Namespace Reference

Functions

def hclust (fiber_input, work_dir, MaxDistance_Threshold, var, PartDistance_Threshold)
 Documentation for the hclust function. More...
 
def ffclust (infile, output_directory, thr_assign=6, thr_join=6)
 Documentation for the FFclust function. More...
 

Detailed Description

Here goes a brief description of the clustering subpackage.

Function Documentation

◆ ffclust()

def phybers.clustering.clustering.ffclust (   infile,
  output_directory,
  thr_assign = 6,
  thr_join = 6 
)

Documentation for the FFclust function.

The inputs for FFClust are:

  1. infile: File with input tractography dataset.
  2. output_directory: Directory to store all the results generated by the algorithm.
  3. thr_assign: Maximum distance threshold for the cluster reassignment in mm, default: 6.
  4. thr_join: Maximum distance threshold for the cluster merge in mm, default: 6.

◆ hclust()

def phybers.clustering.clustering.hclust (   fiber_input,
  work_dir,
  MaxDistance_Threshold,
  var,
  PartDistance_Threshold 
)

Documentation for the hclust function.

The inputs for hclust are:

  1. fiber_input: Tractography data file.
  2. work_dir: Directory to store all the results generated by the algorithm.
  3. MaxDistance_Threshold: Maximum distance threshold (in mm), default 40mm.
  4. var: A similarity scale (in mm), default 60mm.
  5. PartDistance_Threshold: Partition threshold (in mm), default 40mm.