Generated by Cython 0.29.20
Yellow lines hint at Python interaction.
Click on a line that starts with a "+" to see the C code that Cython generated for it.
Raw output: mutiple_algos.c
+001: import math
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+002: import numpy as np
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003: from libc.math cimport sqrt
004:
005: cimport numpy as np
006: cimport cython
007: cimport cost_function_multiple
008:
009: from cost_function_multiple cimport mll_mean, mbic_mean, order_vec
010: from cython.parallel import prange
011:
+012: DTYPE = np.float64
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+014: ctypedef np.float64_t DTYPE_t
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015: ctypedef np.int64_t ITYPE_t
016:
017:
018:
019: @cython.wraparound(False)
020: @cython.boundscheck(False)
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064:
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069: #tau_ = order_vec(tau_, q+3)
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073:
074: @cython.wraparound(False)
075: @cython.boundscheck(False)
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095: cdef double [:] lastchangelike, tmplike
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101: cdef int tstar, i, whichout, nchecktmp
102: cdef double minout
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112:
113:
114: cdef int j, dim_, dim_1
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*((double *) ( /* dim=0 */ (__pyx_v_lastchangelike.data + __pyx_t_16 * __pyx_v_lastchangelike.strides[0]) )) = 0.0;
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for (__pyx_t_19 = 0; __pyx_t_19 < __pyx_t_18; __pyx_t_19+=1) {
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__pyx_t_23 = __pyx_v_j;
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__pyx_t_13 = (2 * __pyx_v_minseglen);
__pyx_t_14 = __pyx_t_13;
for (__pyx_t_15 = __pyx_v_minseglen; __pyx_t_15 < __pyx_t_14; __pyx_t_15+=1) {
__pyx_v_j = __pyx_t_15;
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*((int *) ( /* dim=0 */ (__pyx_v_numchangecpts.data + __pyx_t_28 * __pyx_v_numchangecpts.strides[0]) )) = 1;
}
121: cdef DTYPE_t a1 , a2, a3
122:
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__pyx_t_27 = 0; *((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_27 * __pyx_v_checklist.strides[0]) )) = 0;
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__pyx_t_26 = 1; *((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_26 * __pyx_v_checklist.strides[0]) )) = __pyx_v_minseglen;
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/* … */
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*((double *) ( /* dim=0 */ (__pyx_v_tmplike.data + __pyx_t_23 * __pyx_v_tmplike.strides[0]) )) = ((*((double *) ( /* dim=0 */ (__pyx_v_lastchangelike.data + __pyx_t_24 * __pyx_v_lastchangelike.strides[0]) ))) + __pyx_v_pen);
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__pyx_t_25 = __pyx_v_tstar;
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__pyx_t_22 = __pyx_v_dim_1;
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__pyx_t_33 = __pyx_v_dim_1;
__pyx_t_20 = __pyx_v_i;
__pyx_t_22 = (*((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_20 * __pyx_v_checklist.strides[0]) )));
__pyx_t_24 = 1;
__pyx_t_25 = __pyx_v_dim_1;
__pyx_v_a2 = ((*__Pyx_BufPtrStrided3d(__pyx_t_14pychangepoints_12multiple_dim_DTYPE_t *, __pyx_pybuffernd_sumstat.rcbuffer->pybuffer.buf, __pyx_t_21, __pyx_pybuffernd_sumstat.diminfo[0].strides, __pyx_t_34, __pyx_pybuffernd_sumstat.diminfo[1].strides, __pyx_t_33, __pyx_pybuffernd_sumstat.diminfo[2].strides)) - (*__Pyx_BufPtrStrided3d(__pyx_t_14pychangepoints_12multiple_dim_DTYPE_t *, __pyx_pybuffernd_sumstat.rcbuffer->pybuffer.buf, __pyx_t_22, __pyx_pybuffernd_sumstat.diminfo[0].strides, __pyx_t_24, __pyx_pybuffernd_sumstat.diminfo[1].strides, __pyx_t_25, __pyx_pybuffernd_sumstat.diminfo[2].strides)));
+133: a3 = sumstat[tstar, 2, dim_1]-sumstat[checklist[i], 2, dim_1]
__pyx_t_20 = __pyx_v_tstar;
__pyx_t_25 = 2;
__pyx_t_24 = __pyx_v_dim_1;
__pyx_t_22 = __pyx_v_i;
__pyx_t_33 = (*((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_22 * __pyx_v_checklist.strides[0]) )));
__pyx_t_34 = 2;
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+134: tmplike[i] += current_cost(a1, a2, a3, tstar-checklist[i], dim)
__pyx_t_22 = __pyx_v_i;
__pyx_t_21 = __pyx_v_i;
*((double *) ( /* dim=0 */ (__pyx_v_tmplike.data + __pyx_t_21 * __pyx_v_tmplike.strides[0]) )) += __pyx_v_current_cost(__pyx_v_a1, __pyx_v_a2, __pyx_v_a3, (__pyx_v_tstar - (*((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_22 * __pyx_v_checklist.strides[0]) )))), __pyx_v_dim);
}
}
135: #tmplike[i] += lastchangelike[checklist[i]] + pen
+136: minout = tmplike[0]
__pyx_t_22 = 0;
__pyx_v_minout = (*((double *) ( /* dim=0 */ (__pyx_v_tmplike.data + __pyx_t_22 * __pyx_v_tmplike.strides[0]) )));
+137: whichout = 0
__pyx_v_whichout = 0;
+138: for i in range(1, nchecklist):
__pyx_t_19 = __pyx_v_nchecklist;
__pyx_t_30 = __pyx_t_19;
for (__pyx_t_31 = 1; __pyx_t_31 < __pyx_t_30; __pyx_t_31+=1) {
__pyx_v_i = __pyx_t_31;
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__pyx_t_22 = __pyx_v_i;
__pyx_t_11 = (((*((double *) ( /* dim=0 */ (__pyx_v_tmplike.data + __pyx_t_22 * __pyx_v_tmplike.strides[0]) ))) <= __pyx_v_minout) != 0);
if (__pyx_t_11) {
/* … */
}
}
+140: minout = tmplike[i]
__pyx_t_22 = __pyx_v_i;
__pyx_v_minout = (*((double *) ( /* dim=0 */ (__pyx_v_tmplike.data + __pyx_t_22 * __pyx_v_tmplike.strides[0]) )));
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__pyx_v_whichout = __pyx_v_i;
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__pyx_t_22 = __pyx_v_tstar;
*((double *) ( /* dim=0 */ (__pyx_v_lastchangelike.data + __pyx_t_22 * __pyx_v_lastchangelike.strides[0]) )) = __pyx_v_minout;
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__pyx_t_34 = __pyx_v_whichout;
__pyx_t_33 = __pyx_v_tstar;
*((int *) ( /* dim=0 */ (__pyx_v_lastchangecpts.data + __pyx_t_33 * __pyx_v_lastchangecpts.strides[0]) )) = (*((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_34 * __pyx_v_checklist.strides[0]) )));
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__pyx_t_34 = __pyx_v_tstar;
__pyx_t_24 = (*((int *) ( /* dim=0 */ (__pyx_v_lastchangecpts.data + __pyx_t_34 * __pyx_v_lastchangecpts.strides[0]) )));
__pyx_t_25 = __pyx_v_tstar;
*((int *) ( /* dim=0 */ (__pyx_v_numchangecpts.data + __pyx_t_25 * __pyx_v_numchangecpts.strides[0]) )) = ((*((int *) ( /* dim=0 */ (__pyx_v_numchangecpts.data + __pyx_t_24 * __pyx_v_numchangecpts.strides[0]) ))) + 1);
+145: nchecktmp=0
__pyx_v_nchecktmp = 0;
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__pyx_t_19 = __pyx_v_nchecklist;
__pyx_t_30 = __pyx_t_19;
for (__pyx_t_31 = 0; __pyx_t_31 < __pyx_t_30; __pyx_t_31+=1) {
__pyx_v_i = __pyx_t_31;
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__pyx_t_34 = __pyx_v_i;
__pyx_t_24 = __pyx_v_tstar;
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if (__pyx_t_11) {
/* … */
}
}
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__pyx_t_24 = __pyx_v_i;
__pyx_t_34 = __pyx_v_nchecktmp;
*((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_34 * __pyx_v_checklist.strides[0]) )) = (*((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_24 * __pyx_v_checklist.strides[0]) )));
+149: nchecktmp = nchecktmp+1
__pyx_v_nchecktmp = (__pyx_v_nchecktmp + 1);
+150: nchecklist = nchecktmp
__pyx_v_nchecklist = __pyx_v_nchecktmp;
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__pyx_t_24 = __pyx_v_nchecklist;
*((int *) ( /* dim=0 */ (__pyx_v_checklist.data + __pyx_t_24 * __pyx_v_checklist.strides[0]) )) = (__pyx_v_tstar - (__pyx_v_minseglen - 1));
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__pyx_v_nchecklist = (__pyx_v_nchecklist + 1); }
153:
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__pyx_v_ncpts = 0;
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__pyx_v_last = __pyx_v_n;
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while (1) {
__pyx_t_11 = ((__pyx_v_last != 0) != 0);
if (!__pyx_t_11) break;
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*((int *) ( /* dim=0 */ (__pyx_v_cptsout.data + __pyx_t_20 * __pyx_v_cptsout.strides[0]) )) = __pyx_v_last;
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__pyx_v_last = (*((int *) ( /* dim=0 */ (__pyx_v_lastchangecpts.data + __pyx_t_35 * __pyx_v_lastchangecpts.strides[0]) )));
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__pyx_v_ncpts = (__pyx_v_ncpts + 1); }
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161:
162: @cython.wraparound(False)
163: @cython.boundscheck(False)
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187: cdef ITYPE_t max_which
188: cdef np.ndarray[DTYPE_t, ndim=1] like
189:
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__pyx_t_9 = __pyx_v_Q;
__pyx_t_10 = __pyx_t_9;
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for (__pyx_t_49 = 0; __pyx_t_49 < __pyx_t_48; __pyx_t_49+=1) {
__pyx_v_i = __pyx_t_49;
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if (__pyx_t_7) {
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199: #print(max_out, max_which)
200:
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}
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for (__pyx_t_11 = 1; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
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