Coverage report

File	function	statements	missing	excluded	coverage
partipy/__init__.py	(no function)	6	0	0	100%
partipy/arch.py	AA.__init__	37	6	0	84%
partipy/arch.py	AA.fit	114	12	0	89%
partipy/arch.py	AA.archetypes	1	1	0	0%
partipy/arch.py	AA.transform	11	11	0	0%
partipy/arch.py	AA.return_all	1	1	0	0%
partipy/arch.py	(no function)	12	0	0	100%
partipy/const.py	(no function)	9	0	0	100%
partipy/coreset.py	construct_coreset	9	0	0	100%
partipy/coreset.py	construct_lightweight_coreset	9	0	0	100%
partipy/coreset.py	construct_uniform_coreset	0	0	6	100%
partipy/coreset.py	(no function)	5	0	1	100%
partipy/enrichment.py	compute_archetype_weights	21	2	0	90%
partipy/enrichment.py	compute_archetype_expression	13	0	0	100%
partipy/enrichment.py	extract_enriched_processes	18	0	0	100%
partipy/enrichment.py	extract_specific_processes	14	0	0	100%
partipy/enrichment.py	compute_meta_enrichment	29	1	0	97%
partipy/enrichment.py	(no function)	10	0	0	100%
partipy/initialize.py	_construct_B_from_indices	7	0	0	100%
partipy/initialize.py	_init_A	5	0	0	100%
partipy/initialize.py	_init_uniform	9	1	0	89%
partipy/initialize.py	_init_furthest_sum	20	1	0	95%
partipy/initialize.py	_init_plus_plus	19	1	0	95%
partipy/initialize.py	(no function)	8	0	0	100%
partipy/optim.py	_inspect_array	2	2	0	0%
partipy/optim.py	_compute_RSS_AZ	0	0	5	100%
partipy/optim.py	_compute_RSS_ABX	0	0	6	100%
partipy/optim.py	_compute_A_regularized_nnls	5	0	0	100%
partipy/optim.py	_compute_B_regularized_nnls	9	1	0	89%
partipy/optim.py	_compute_A_projected_gradients	6	0	0	100%
partipy/optim.py	_compute_A_projected_gradients_jit	0	0	43	100%
partipy/optim.py	_compute_B_projected_gradients	9	0	0	100%
partipy/optim.py	_compute_B_projected_gradients_jit	0	0	44	100%
partipy/optim.py	_add_argmins_per_row	0	0	3	100%
partipy/optim.py	_add_argmins_per_row_p	0	0	3	100%
partipy/optim.py	_compute_A_frank_wolfe	6	0	0	100%
partipy/optim.py	_compute_A_frank_wolfe_jit	0	0	36	100%
partipy/optim.py	_compute_B_frank_wolfe	9	0	0	100%
partipy/optim.py	_compute_B_frank_wolfe_jit	0	0	37	100%
partipy/optim.py	(no function)	11	0	70	100%
partipy/paretoti.py	set_obsm	8	3	0	62%
partipy/paretoti.py	_validate_aa_config	16	5	0	69%
partipy/paretoti.py	_validate_aa_results	2	0	0	100%
partipy/paretoti.py	var_explained_aa	27	3	0	89%
partipy/paretoti.py	var_explained_aa._compute_archeptyes	2	2	0	0%
partipy/paretoti.py	bootstrap_aa	29	0	0	100%
partipy/paretoti.py	bootstrap_aa.compute_bootstrap_z	1	1	0	0%
partipy/paretoti.py	bootstrap_aa_multiple_k	12	2	0	83%
partipy/paretoti.py	_project_on_affine_subspace	0	0	29	100%
partipy/paretoti.py	_compute_t_ratio	0	0	30	100%
partipy/paretoti.py	compute_t_ratio	0	0	26	100%
partipy/paretoti.py	t_ratio_significance	0	0	47	100%
partipy/paretoti.py	t_ratio_significance.compute_randomized_t_ratio	0	0	4	100%
partipy/paretoti.py	t_ratio_significance_shuffled	0	0	47	100%
partipy/paretoti.py	t_ratio_significance_shuffled.compute_randomized_t_ratio	0	0	5	100%
partipy/paretoti.py	_align_archetypes	3	0	0	100%
partipy/paretoti.py	compute_archetypes	23	4	0	83%
partipy/paretoti.py	(no function)	20	0	5	100%
partipy/plotting.py	plot_var_explained	7	0	0	100%
partipy/plotting.py	plot_IC	6	2	0	67%
partipy/plotting.py	plot_bootstrap_2D	8	2	0	75%
partipy/plotting.py	plot_bootstrap_3D	6	1	0	83%
partipy/plotting.py	plot_bootstrap_multiple_k	7	1	0	86%
partipy/plotting.py	plot_archetypes_2D	9	0	0	100%
partipy/plotting.py	plot_2D	42	16	0	62%
partipy/plotting.py	plot_archetypes_3D	9	0	0	100%
partipy/plotting.py	plot_3D	22	6	0	73%
partipy/plotting.py	barplot_meta_enrichment	6	0	0	100%
partipy/plotting.py	heatmap_meta_enrichment	4	0	0	100%
partipy/plotting.py	barplot_functional_enrichment	9	1	0	89%
partipy/plotting.py	barplot_enrichment_comparison	6	0	0	100%
partipy/plotting.py	radarplot_meta_enrichment	8	0	0	100%
partipy/plotting.py	radarplot_meta_enrichment.make_radar	17	0	0	100%
partipy/plotting.py	(no function)	24	0	0	100%
partipy/selection.py	_invert_SPD_mtx	4	0	0	100%
partipy/selection.py	compute_IC_approx	9	9	0	0%
partipy/selection.py	compute_IC	11	0	0	100%
partipy/selection.py	(no function)	5	0	0	100%
partipy/simulate.py	_generate_extreme_archetypes	24	13	0	46%
partipy/simulate.py	_select_distant_vertices	11	1	0	91%
partipy/simulate.py	simulate_archetypes	11	0	0	100%
partipy/simulate.py	(no function)	5	0	0	100%
partipy/utils.py	align_archetypes	4	0	0	100%
partipy/utils.py	compute_rowwise_l2_distance	3	0	0	100%
partipy/utils.py	compute_rowwise_l1_distance	3	3	0	0%
partipy/utils.py	compute_relative_rowwise_l2_distance	4	0	0	100%
partipy/utils.py	(no function)	7	0	0	100%
partipy/weights.py	compute_bisquare_weights	9	1	0	89%
partipy/weights.py	compute_huber_weights	11	1	0	91%
partipy/weights.py	(no function)	3	0	0	100%
Total		901	117	447	87%