Coverage for partipy/__init__.py: 100%

1__version__ = "0.0.1" 

2 

3from .arch import AA 

4from .enrichment import ( 

5 compute_archetype_expression, 

6 compute_archetype_weights, 

7 compute_meta_enrichment, 

8 extract_enriched_processes, 

9 extract_specific_processes, 

10) 

11from .paretoti import ( 

12 bootstrap_aa, 

13 bootstrap_aa_multiple_k, 

14 compute_archetypes, 

15 compute_t_ratio, 

16 set_obsm, 

17 t_ratio_significance, 

18 t_ratio_significance_shuffled, 

19 var_explained_aa, 

20) 

21from .plotting import ( 

22 barplot_enrichment_comparison, 

23 barplot_functional_enrichment, 

24 barplot_meta_enrichment, 

25 heatmap_meta_enrichment, 

26 plot_2D, 

27 plot_3D, 

28 plot_archetypes_2D, 

29 plot_archetypes_3D, 

30 plot_bootstrap_2D, 

31 plot_bootstrap_3D, 

32 plot_bootstrap_multiple_k, 

33 plot_IC, 

34 plot_var_explained, 

35 radarplot_meta_enrichment, 

36) 

37from .simulate import simulate_archetypes