LICENSE
README.md
pyproject.toml
gpmap/__init__.py
gpmap/aligner.py
gpmap/datasets.py
gpmap/genotypes.py
gpmap/gp.py
gpmap/graph.py
gpmap/inference.py
gpmap/likelihood.py
gpmap/linop.py
gpmap/matrix.py
gpmap/randwalk.py
gpmap/seq.py
gpmap/settings.py
gpmap/space.py
gpmap/summary.py
gpmap/transform.py
gpmap/utils.py
gpmap/bin/__init__.py
gpmap/bin/calc_tpt.py
gpmap/bin/calc_visualization.py
gpmap/bin/evaluate_split_fits.py
gpmap/bin/filter_genotypes.py
gpmap/bin/fit_seqdeft.py
gpmap/bin/plot_relaxation_times.py
gpmap/bin/plot_visualization.py
gpmap/bin/split_data.py
gpmap/bin/vc_regression.py
gpmap/datasets/data/5ss.pq
gpmap/datasets/data/Flynn2013.csv
gpmap/datasets/data/Weinreich2006.beta_lactamase.csv
gpmap/datasets/data/dmsc.pq
gpmap/datasets/data/f1u.pq
gpmap/datasets/data/fyn-sh3.pq
gpmap/datasets/data/gb1.pq
gpmap/datasets/data/intron.30C.pq
gpmap/datasets/data/pard.pq
gpmap/datasets/data/serine.pq
gpmap/datasets/data/shine_dalgarno.pq
gpmap/datasets/data/smn1.pq
gpmap/datasets/data/test.pq
gpmap/datasets/data/trna.pq
gpmap/datasets/landscapes/5ss.pq
gpmap/datasets/landscapes/dmsc.pq
gpmap/datasets/landscapes/f1u.pq
gpmap/datasets/landscapes/gb1.pq
gpmap/datasets/landscapes/intron.30C.pq
gpmap/datasets/landscapes/pard.pq
gpmap/datasets/landscapes/serine.pq
gpmap/datasets/landscapes/shine_dalgarno.pq
gpmap/datasets/landscapes/smn1.pq
gpmap/datasets/landscapes/test.pq
gpmap/datasets/landscapes/trna.pq
gpmap/datasets/raw/5ss.pq
gpmap/datasets/raw/gb1.pq
gpmap/datasets/raw/pard.pq
gpmap/datasets/visualizations/5ss.edges.npz
gpmap/datasets/visualizations/5ss.nodes.pq
gpmap/datasets/visualizations/5ss.relaxation_times.pq
gpmap/datasets/visualizations/f1u.edges.npz
gpmap/datasets/visualizations/f1u.nodes.pq
gpmap/datasets/visualizations/f1u.relaxation_times.pq
gpmap/datasets/visualizations/gb1.decay_rates.csv
gpmap/datasets/visualizations/gb1.edges.npz
gpmap/datasets/visualizations/gb1.nodes.pq
gpmap/datasets/visualizations/gb1.relaxation_times.pq
gpmap/datasets/visualizations/intron.30C.edges.npz
gpmap/datasets/visualizations/intron.30C.nodes.pq
gpmap/datasets/visualizations/serine.edges.npz
gpmap/datasets/visualizations/serine.nodes.pq
gpmap/datasets/visualizations/serine.relaxation_times.pq
gpmap/datasets/visualizations/test.edges.npz
gpmap/datasets/visualizations/test.nodes.pq
gpmap/datasets/visualizations/test.relaxation_times.pq
gpmap/datasets/visualizations/trna.edges.npz
gpmap/datasets/visualizations/trna.nodes.pq
gpmap/datasets/visualizations/trna.relaxation_times.pq
gpmap/plot/__init__.py
gpmap/plot/ds.py
gpmap/plot/mpl.py
gpmap/plot/ply.py
gpmap/plot/utils.py
gpmap_tools.egg-info/PKG-INFO
gpmap_tools.egg-info/SOURCES.txt
gpmap_tools.egg-info/dependency_links.txt
gpmap_tools.egg-info/entry_points.txt
gpmap_tools.egg-info/requires.txt
gpmap_tools.egg-info/top_level.txt
test/test_aligner.py
test/test_connectedness.py
test/test_datasets.py
test/test_genotypes.py
test/test_graph.py
test/test_ler.py
test/test_linalg.py
test/test_linops.py
test/test_matrix.py
test/test_mei.py
test/test_plots.py
test/test_randwalk.py
test/test_seq.py
test/test_seqdeft.py
test/test_space.py
test/test_summary.py
test/test_transform.py
test/test_utils.py
test/test_vc.py