click>=8.1
neo4j>=5.0
numpy>=1.24
scipy>=1.10
pandas>=2.0
statsmodels>=0.14
networkx>=3.0
matplotlib>=3.7
requests>=2.31

[all]
graphgwas[api,dev,genotypes,gnn,mcp,sumstats]

[api]
fastapi>=0.110
uvicorn[standard]>=0.27
pydantic>=2.0

[dev]
pytest>=7.0
pytest-cov>=4.1
ruff>=0.4
build>=1.0
twine>=4.0

[genotypes]
cyvcf2>=0.30
bgen>=1.7

[gnn]
torch>=2.0
torch-geometric>=2.4
scikit-learn>=1.3

[hail]
hail>=0.2.130

[mcp]
mcp>=1.0

[sumstats]
pysam>=0.22
