LICENSE
README.md
pyproject.toml
src/gene_calling_benchmark/__init__.py
src/gene_calling_benchmark/cli.py
src/gene_calling_benchmark/feature_roles.py
src/gene_calling_benchmark/io_utils.py
src/gene_calling_benchmark/label_definition.py
src/gene_calling_benchmark/pipeline.py
src/gene_calling_benchmark/transcript_mapping.py
src/gene_calling_benchmark/wandb_logger.py
src/gene_calling_benchmark.egg-info/PKG-INFO
src/gene_calling_benchmark.egg-info/SOURCES.txt
src/gene_calling_benchmark.egg-info/dependency_links.txt
src/gene_calling_benchmark.egg-info/entry_points.txt
src/gene_calling_benchmark.egg-info/requires.txt
src/gene_calling_benchmark.egg-info/top_level.txt
src/gene_calling_benchmark/datasets/__init__.py
src/gene_calling_benchmark/datasets/_fetch.py
src/gene_calling_benchmark/datasets/_registry.py
src/gene_calling_benchmark/datasets/registry.yaml
src/gene_calling_benchmark/eval/__init__.py
src/gene_calling_benchmark/eval/accumulators.py
src/gene_calling_benchmark/eval/boundary_precision.py
src/gene_calling_benchmark/eval/chain_comparison.py
src/gene_calling_benchmark/eval/evaluate_predictors.py
src/gene_calling_benchmark/eval/frame_shift.py
src/gene_calling_benchmark/eval/global_metrics.py
src/gene_calling_benchmark/eval/indel_metrics.py
src/gene_calling_benchmark/eval/preprocessing.py
src/gene_calling_benchmark/eval/section_metrics.py
src/gene_calling_benchmark/eval/splice_sites.py
src/gene_calling_benchmark/eval/state_transitions.py
src/gene_calling_benchmark/eval/statistics.py
src/gene_calling_benchmark/eval/structural_summary.py
src/gene_calling_benchmark/eval/structure.py
src/gene_calling_benchmark/eval/transcript_classification.py
src/gene_calling_benchmark/eval/utils.py
src/gene_calling_benchmark/icons/full_coverage.png
src/gene_calling_benchmark/icons/internal.png
src/gene_calling_benchmark/icons/iou.png
src/gene_calling_benchmark/icons/overlap.png
src/gene_calling_benchmark/icons/prefect_hit.png
src/gene_calling_benchmark/plotting/__init__.py
src/gene_calling_benchmark/plotting/config.py
src/gene_calling_benchmark/plotting/icons.py
src/gene_calling_benchmark/plotting/summary_stat_plotting.py
src/gene_calling_benchmark/plotting/utils.py
src/gene_calling_benchmark/plotting/metrics/__init__.py
src/gene_calling_benchmark/plotting/metrics/boundary.py
src/gene_calling_benchmark/plotting/metrics/diagnostic.py
src/gene_calling_benchmark/plotting/metrics/indel.py
src/gene_calling_benchmark/plotting/metrics/iou.py
src/gene_calling_benchmark/plotting/metrics/ml.py
src/gene_calling_benchmark/plotting/metrics/phase_drift.py
src/gene_calling_benchmark/plotting/metrics/splice_sites.py
src/gene_calling_benchmark/plotting/metrics/structural.py
src/gene_calling_benchmark/plotting/metrics/transitions.py