CHANGELOG.rst
LICENSE
MANIFEST.in
README.rst
pyproject.toml
requirements.txt
tipp3/__init__.py
tipp3/configs.py
tipp3/default.config
tipp3/extract_blast_alignment.py
tipp3/init_configs.py
tipp3/jobs.py
tipp3/jplace_classifier.py
tipp3/query_abundance.py
tipp3/query_alignment.py
tipp3/query_binning.py
tipp3/query_placement.py
tipp3/refpkg_loader.py
tipp3/tipp3_pipeline.py
tipp3.egg-info/PKG-INFO
tipp3.egg-info/SOURCES.txt
tipp3.egg-info/dependency_links.txt
tipp3.egg-info/entry_points.txt
tipp3.egg-info/requires.txt
tipp3.egg-info/top_level.txt
tipp3/helpers/__init__.py
tipp3/helpers/alignment_tools.py
tipp3/helpers/general_tools.py
tipp3/tools/pplacer/pplacer