LICENSE
README.md
pyproject.toml
src/thunder/__init__.py
src/thunder/benchmark.py
src/thunder/main.py
src/thunder/config/config.yaml
src/thunder/config/adaptation/frozen.yaml
src/thunder/config/adaptation/lora.yaml
src/thunder/config/ckpt_saving/save_best_ckpt_only.yaml
src/thunder/config/ckpt_saving/save_ckpts_all_epochs.yaml
src/thunder/config/data_loading/embedding_pre_loading.yaml
src/thunder/config/data_loading/image_pre_loading.yaml
src/thunder/config/data_loading/online_loading.yaml
src/thunder/config/dataset/bach.yaml
src/thunder/config/dataset/bracs.yaml
src/thunder/config/dataset/break_his.yaml
src/thunder/config/dataset/ccrcc.yaml
src/thunder/config/dataset/crc.yaml
src/thunder/config/dataset/esca.yaml
src/thunder/config/dataset/mhist.yaml
src/thunder/config/dataset/ocelot.yaml
src/thunder/config/dataset/pannuke.yaml
src/thunder/config/dataset/patch_camelyon.yaml
src/thunder/config/dataset/segpath_epithelial.yaml
src/thunder/config/dataset/segpath_lymphocytes.yaml
src/thunder/config/dataset/spider_breast.yaml
src/thunder/config/dataset/spider_colorectal.yaml
src/thunder/config/dataset/spider_skin.yaml
src/thunder/config/dataset/spider_thorax.yaml
src/thunder/config/dataset/tcga_crc_msi.yaml
src/thunder/config/dataset/tcga_tils.yaml
src/thunder/config/dataset/tcga_uniform.yaml
src/thunder/config/dataset/wilds.yaml
src/thunder/config/embedding_recomputing/no_recomp_embs.yaml
src/thunder/config/embedding_recomputing/recomp_embs.yaml
src/thunder/config/model_retraining/no_retrain_model.yaml
src/thunder/config/model_retraining/retrain_model.yaml
src/thunder/config/pretrained_model/clipvitbasepatch32.yaml
src/thunder/config/pretrained_model/clipvitlargepatch14.yaml
src/thunder/config/pretrained_model/conch.yaml
src/thunder/config/pretrained_model/dinov2base.yaml
src/thunder/config/pretrained_model/dinov2large.yaml
src/thunder/config/pretrained_model/dinov3vitb16pretrainlvd1689m.yaml
src/thunder/config/pretrained_model/dinov3vitl16pretrainlvd1689m.yaml
src/thunder/config/pretrained_model/dinov3vits16pretrainlvd1689m.yaml
src/thunder/config/pretrained_model/h0mini.yaml
src/thunder/config/pretrained_model/hiboub.yaml
src/thunder/config/pretrained_model/hiboul.yaml
src/thunder/config/pretrained_model/hoptimus0.yaml
src/thunder/config/pretrained_model/hoptimus1.yaml
src/thunder/config/pretrained_model/kaiko_vitb16.yaml
src/thunder/config/pretrained_model/kaiko_vitb8.yaml
src/thunder/config/pretrained_model/kaiko_vits16.yaml
src/thunder/config/pretrained_model/kaiko_vits8.yaml
src/thunder/config/pretrained_model/keep.yaml
src/thunder/config/pretrained_model/midnight.yaml
src/thunder/config/pretrained_model/musk.yaml
src/thunder/config/pretrained_model/openmidnight.yaml
src/thunder/config/pretrained_model/phikon.yaml
src/thunder/config/pretrained_model/phikon2.yaml
src/thunder/config/pretrained_model/plip.yaml
src/thunder/config/pretrained_model/provgigapath.yaml
src/thunder/config/pretrained_model/quiltnetb32.yaml
src/thunder/config/pretrained_model/titan.yaml
src/thunder/config/pretrained_model/uni.yaml
src/thunder/config/pretrained_model/uni2h.yaml
src/thunder/config/pretrained_model/virchow.yaml
src/thunder/config/pretrained_model/virchow2.yaml
src/thunder/config/pretrained_model/vitbasepatch16224in21k.yaml
src/thunder/config/pretrained_model/vitlargepatch16224in21k.yaml
src/thunder/config/task/adversarial_attack.yaml
src/thunder/config/task/alignment_scoring.yaml
src/thunder/config/task/image_retrieval.yaml
src/thunder/config/task/knn.yaml
src/thunder/config/task/linear_probing.yaml
src/thunder/config/task/pre_computing_embeddings.yaml
src/thunder/config/task/segmentation.yaml
src/thunder/config/task/simple_shot.yaml
src/thunder/config/task/transformation_invariance.yaml
src/thunder/config/task/zero_shot_vlm.yaml
src/thunder/config/wandb/offline.yaml
src/thunder/config/wandb/online.yaml
src/thunder/datasets/__init__.py
src/thunder/datasets/data_splits.py
src/thunder/datasets/download.py
src/thunder/datasets/utils.py
src/thunder/datasets/dataset/__init__.py
src/thunder/datasets/dataset/bach.py
src/thunder/datasets/dataset/bracs.py
src/thunder/datasets/dataset/break_his.py
src/thunder/datasets/dataset/ccrcc.py
src/thunder/datasets/dataset/crc.py
src/thunder/datasets/dataset/esca.py
src/thunder/datasets/dataset/mhist.py
src/thunder/datasets/dataset/ocelot.py
src/thunder/datasets/dataset/pannuke.py
src/thunder/datasets/dataset/patch_camelyon.py
src/thunder/datasets/dataset/segpath_epithelial.py
src/thunder/datasets/dataset/segpath_lymphocytes.py
src/thunder/datasets/dataset/spider_breast.py
src/thunder/datasets/dataset/spider_colorectal.py
src/thunder/datasets/dataset/spider_skin.py
src/thunder/datasets/dataset/spider_thorax.py
src/thunder/datasets/dataset/tcga_crc_msi.py
src/thunder/datasets/dataset/tcga_tils.py
src/thunder/datasets/dataset/tcga_uniform.py
src/thunder/datasets/dataset/wilds.py
src/thunder/models/__init__.py
src/thunder/models/adapters.py
src/thunder/models/download.py
src/thunder/models/pretrained_models.py
src/thunder/models/task_specific_models.py
src/thunder/models/utils.py
src/thunder/tasks/__init__.py
src/thunder/tasks/adversarial_attack.py
src/thunder/tasks/alignment_scoring.py
src/thunder/tasks/image_retrieval.py
src/thunder/tasks/knn_classification.py
src/thunder/tasks/pre_computing_patch_embeddings.py
src/thunder/tasks/simple_shot.py
src/thunder/tasks/train_eval_probe.py
src/thunder/tasks/transformation_invariance.py
src/thunder/tasks/zero_shot_vlm.py
src/thunder/utils/__init__.py
src/thunder/utils/alignment_metrics.py
src/thunder/utils/calibration_metrics.py
src/thunder/utils/config.py
src/thunder/utils/constants.py
src/thunder/utils/data.py
src/thunder/utils/dice_loss.py
src/thunder/utils/downstream_metrics.py
src/thunder/utils/pgd_attack_linear.py
src/thunder/utils/results.py
src/thunder/utils/transforms.py
src/thunder/utils/utils.py
src/thunder_bench.egg-info/PKG-INFO
src/thunder_bench.egg-info/SOURCES.txt
src/thunder_bench.egg-info/dependency_links.txt
src/thunder_bench.egg-info/entry_points.txt
src/thunder_bench.egg-info/requires.txt
src/thunder_bench.egg-info/top_level.txt
tests/test_benchmark.py
tests/test_datasets.py
tests/test_models.py