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1 __VERSION__="ete2-2.0rev96" 2 # #START_LICENSE########################################################### 3 # 4 # Copyright (C) 2009 by Jaime Huerta Cepas. All rights reserved. 5 # email: jhcepas@gmail.com 6 # 7 # This file is part of the Environment for Tree Exploration program (ETE). 8 # http://ete.cgenomics.org 9 # 10 # ETE is free software: you can redistribute it and/or modify it 11 # under the terms of the GNU General Public License as published by 12 # the Free Software Foundation, either version 3 of the License, or 13 # (at your option) any later version. 14 # 15 # ETE is distributed in the hope that it will be useful, 16 # but WITHOUT ANY WARRANTY; without even the implied warranty of 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 18 # GNU General Public License for more details. 19 # 20 # You should have received a copy of the GNU General Public License 21 # along with ETE. If not, see <http://www.gnu.org/licenses/>. 22 # 23 # #END_LICENSE############################################################# 24 25 __all__ = ["EvolEvent"] 2628 """ Basic evolutionary event. It stores all the information about an 29 event(node) ocurred in a phylogenetic tree. """4731 self.etype = None # 'S=speciation D=duplication' 32 self.in_seqs = [] 33 self.out_seqs = [] 34 self.dup_score = None 35 self.sos = None 36 37 # Not documented 38 self.inparalogs = None 39 self.outparalogs = None 40 self.outgroup_spcs = None # outgroup 41 self.e_newick = None # 42 self.root_age = None # estimated time for the outgroup node 43 self.orthologs = None 44 self.famSize = None 45 self.seed = None # Seed ID used to start the phylogenetic pipeline 46 self.branch_supports = []
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