.dockerignore
.gitignore
Dockerfile
LICENSE
README.md
mkdocs.yml
pyproject.toml
setup.py
uv.lock
.github/dependabot.yml
.github/workflows/build-container.yml
.github/workflows/deploy-docs.yml
.github/workflows/lint.yml
.github/workflows/pypi.yml
.github/workflows/python-tests.yml
bertnado/__init__.py
bertnado/_version.py
bertnado/api.py
bertnado/cli.py
bertnado.egg-info/PKG-INFO
bertnado.egg-info/SOURCES.txt
bertnado.egg-info/dependency_links.txt
bertnado.egg-info/entry_points.txt
bertnado.egg-info/requires.txt
bertnado.egg-info/top_level.txt
bertnado/data/prepare_dataset.py
bertnado/evaluation/feature_extraction.py
bertnado/evaluation/predict.py
bertnado/training/finetune.py
bertnado/training/full_train.py
bertnado/training/metrics.py
bertnado/training/model.py
bertnado/training/optimization.py
bertnado/training/sweep.py
bertnado/training/trainers.py
docs/api.md
docs/cli.md
docs/data.md
docs/feature.md
docs/index.md
docs/predict.md
docs/sweep.md
docs/train.md
docs/workflow.md
docs/assets/bertnado.png
docs/stylesheets/extra.css
tests/mock_dataset.py
tests/mock_fasta.py
tests/test_cli.py
tests/test_predict.py
tests/test_sweep.py
tests/test_training_args.py